View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11574_low_6 (Length: 612)
Name: NF11574_low_6
Description: NF11574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11574_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 598; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 598; E-Value: 0
Query Start/End: Original strand, 1 - 606
Target Start/End: Complemental strand, 6388788 - 6388183
Alignment:
| Q |
1 |
atttcagctttacaaggaaaagacatgaaaaagtttatttgaaagtctggctataaatatggccaagtccataggtttctacctcatgaagtgaaaaact |
100 |
Q |
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| T |
6388788 |
atttcagctttacaaggaaaagacatgaaaaagtttatttgaaagtctggctataaatatggccaagtccataggtttctacctcatgaagtgaaaaact |
6388689 |
T |
|
| Q |
101 |
taactactatacctcttttgaagctttgaggattcaacttctaaactcataacatgtcattttccggtctcaaaaacttcttccagaggttctggttgga |
200 |
Q |
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| T |
6388688 |
taactactatacctcttttgaagctttgaggattcaatttctaaactcataacatgtcattttccggtctcaaaaacttcttccagaggttctggttgga |
6388589 |
T |
|
| Q |
201 |
cgaaatggaaatgggaagttatacacatagcagctttttgtctagtgatcttctaccatctcttggcgcccgaacaaaccaggaaactagactacgaaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6388588 |
cgaaatggaaatgggaagttatacacatagcagctttttgtctagtgatcttctaccatctcttggcgcccgaacaaaccaggaaactagactacgaaaa |
6388489 |
T |
|
| Q |
301 |
tacataatctccccattcaatcctcagtataggtgatgaccctttacatagtcacaatataacataactcttgtgaatattgtgtctgcatcttctcaac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6388488 |
tacataatctccccattcaatcctcagtataggtgatgactctttacatagtcacaatataacataactcttgtgaatattgtgtctgcatcttctcaac |
6388389 |
T |
|
| Q |
401 |
ttttcatgtataacttattacaggctttgggagttgttactgattgttctagtcatatactcagcttggatatgcccctttgagtttgcctttctgacgt |
500 |
Q |
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| T |
6388388 |
ttttcatgtataacttattacaggctttgggagttgttactgattgttctagtcatatactcagcttggatatgcccctttgagtttgcctttctgacgt |
6388289 |
T |
|
| Q |
501 |
ataagcaaaatggactattcatcatagacaacattgtcaatggcttcttcgccatcgacatcgtgcttacattcttcgttgcataccacgatagtcattc |
600 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6388288 |
ataagcaaaatggactattcatcatagacaacattgtcaatggcttcttcgccatcgacatcgtgcttacattcttcgttgcataccacgatagtcattc |
6388189 |
T |
|
| Q |
601 |
ttctct |
606 |
Q |
| |
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|||||| |
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| T |
6388188 |
ttctct |
6388183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 514 - 585
Target Start/End: Complemental strand, 18171824 - 18171753
Alignment:
| Q |
514 |
actattcatcatagacaacattgtcaatggcttcttcgccatcgacatcgtgcttacattcttcgttgcata |
585 |
Q |
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||||||||||||||| |||||||| ||||| ||||| || || ||||| ||| | |||||||| |||||||| |
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| T |
18171824 |
actattcatcatagataacattgtgaatggtttctttgcaattgacatagtgatgacattctttgttgcata |
18171753 |
T |
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