View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11574_low_7 (Length: 553)
Name: NF11574_low_7
Description: NF11574
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11574_low_7 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 427; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 503
Target Start/End: Complemental strand, 7979316 - 7978830
Alignment:
| Q |
18 |
acatcattgcaaaagttccatgatattgtgtgtccaagctgcaaaaagataaagttgacctatttcatcatgatatttgcttcagttcactttgtgttat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7979316 |
acatcattgcaaaagttccatgatattgtgtgtccaagctgcaaaaagataaagttgacctatttcatcatgatatttgcttcagttcactttgtgttat |
7979217 |
T |
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| Q |
118 |
ctcatctccctgatttcaactcaatttctggtgtgtccttggcagcagcagtcatgtccttcaggtataaaacatttatatttttcaaaatactttcaat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
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| T |
7979216 |
ctcatctccctgatttcaactcaatttctggtgtgtccttggcagcagcagtcatgtccttcaggtataaaacttttatatttttcaaaatattttcaat |
7979117 |
T |
|
| Q |
218 |
caatgataattctcaagttattaaata-ttttgattgggatgtgttatagttaatgtggcatacagtttcacgctataagcgatcttcgtcactgattta |
316 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||| |
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| T |
7979116 |
caatgataattctcaagttattaaatatttttgattgggatgtgttatagttaatgtggcatacagtttcacgctataagcgatctttgccaccgattta |
7979017 |
T |
|
| Q |
317 |
atactagacagttcatattatacatttaagtttcacacaaataactgaactcatctctcgacttagatcgagcggcccagatgtagtactgcgtgatgta |
416 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
7979016 |
atactagacagttcatattatacatttaagtttcacacaaataactgaactcatctctcgacttagatcgagcagcccagatgtagtactgtgtgatgta |
7978917 |
T |
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| Q |
417 |
gttgttgcacctaatccaaatccaatttatctagttgaatgaggaaaatactacgaagaatggggcagggtggggacatgttttacc |
503 |
Q |
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| T |
7978916 |
gttgttgcgcctaatccaaatccaatttttctagttgaatgagaaaaatactacgaagaatggggcaaggtggggacagcttttacc |
7978830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 176
Target Start/End: Original strand, 8032062 - 8032219
Alignment:
| Q |
19 |
catcattgcaaaagttccatgatattgtgtgtccaagctgcaaaaagataaagttgacctatttcatcatgatatttgcttcagttcactttgtgttatc |
118 |
Q |
| |
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||||||||| |||||||| ||| |||||| |||| |||||||| || || |||||||||||||| ||||| ||||| || | ||| ||||| || | |
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| T |
8032062 |
catcattgcggaagttccacaatacagtgtgttcaagttgcaaaaatatcaaattgacctatttcattatgatctttgcctctgctcaatttgtattgtg |
8032161 |
T |
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| Q |
119 |
tcatctccctgatttcaactcaatttctggtgtgtccttggcagcagcagtcatgtcc |
176 |
Q |
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| T |
8032162 |
tcatctaccaaacttgaactccatttccggtgtatccttggttgcagcagtcatgtcc |
8032219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 3270 - 3113
Alignment:
| Q |
19 |
catcattgcaaaagttccatgatattgtgtgtccaagctgcaaaaagataaagttgacctatttcatcatgatatttgcttcagttcactttgtgttatc |
118 |
Q |
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||||| ||| ||||||||| ||| ||||||||||| |||||||| || || ||||| |||||||| ||||| ||||| || | ||| ||||| || | |
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| T |
3270 |
catcactgcgaaagttccacaatacagtgtgtccaagttgcaaaaatatcaaattgacatatttcattatgatctttgcctctgctcaatttgtattgtg |
3171 |
T |
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| Q |
119 |
tcatctccctgatttcaactcaatttctggtgtgtccttggcagcagcagtcatgtcc |
176 |
Q |
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| T |
3170 |
tcatctaccaaacttgaactccatttctggtgtatctttggtggcagcagtcatgtcc |
3113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 184
Target Start/End: Complemental strand, 14198674 - 14198547
Alignment:
| Q |
57 |
tgcaaaaagataaagttgacctatttcatcatgatatttgcttcagttcactttgtgttatctcatctccctgatttcaactcaatttctggtgtgtcct |
156 |
Q |
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| T |
14198674 |
tgcaaaaaaatcaaattgacttattttataatgatttttgcctctgttcactttgtcttgtctcacctccctaacttgaactctatttctggtgtctctt |
14198575 |
T |
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| Q |
157 |
tggcagcagcagtcatgtccttcaggta |
184 |
Q |
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| T |
14198574 |
tagccgccgctgtcatgtcgttaaggta |
14198547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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