View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_high_10 (Length: 492)
Name: NF11575_high_10
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_high_10 |
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| [»] scaffold0119 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 78; Significance: 4e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 204 - 305
Target Start/End: Complemental strand, 23363075 - 23362974
Alignment:
| Q |
204 |
gcgtgtcagttgtgcatagcagccaaatgtagccgcttttatccggtgcggtgcggttctagtgcggtcaggtgtgccgctccacaaatagaaacaaaaa |
303 |
Q |
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| T |
23363075 |
gcgtgtcagttgtgcatagcggccaaatgcggccgcttttatccggtgcggtgcggttctagtgcggtcagatgcgccactccacaaatagaaacaaaaa |
23362976 |
T |
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| Q |
304 |
ta |
305 |
Q |
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|| |
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| T |
23362975 |
ta |
23362974 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 450 - 491
Target Start/End: Complemental strand, 23362831 - 23362789
Alignment:
| Q |
450 |
gagatcgaaaaagagagtacagagtaa-agagagacatcaaat |
491 |
Q |
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| T |
23362831 |
gagatcgaaaaagaaagtacagagtaacagagagacatcaaat |
23362789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 207 - 305
Target Start/End: Original strand, 25966 - 26064
Alignment:
| Q |
207 |
tgtcagttgtgcatagcagccaaatgtagccgcttttatccggtgcggtgcggttctagtgcggtcaggtgtgccgctccacaaatagaaacaaaaata |
305 |
Q |
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||||||| |||||||| |||||||| |||| |||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| |
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| T |
25966 |
tgtcagtgttgcatagcggccaaatgcggccgtttttatccggtgcggtgcggttctggtgcggtcagatgcgccgctccacaaatagaaacaaaaata |
26064 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 492
Target Start/End: Original strand, 26223 - 26266
Alignment:
| Q |
450 |
gagatcgaaaaagagagtacagagtaa-agagagacatcaaatc |
492 |
Q |
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| T |
26223 |
gagatcgaaaaagaaagtacagagtaacagagagacatcaaatc |
26266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 63; Significance: 4e-27; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 207 - 305
Target Start/End: Complemental strand, 1275125 - 1275027
Alignment:
| Q |
207 |
tgtcagttgtgcatagcagccaaatgtagccgcttttatccggtgcggtgcggttctagtgcggtcaggtgtgccgctccacaaatagaaacaaaaata |
305 |
Q |
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||||||| |||||||| |||||||| |||| |||||||||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| |
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| T |
1275125 |
tgtcagtgttgcatagcggccaaatgcggccgtttttatccggtgcggtgcggttctggtgcggtcagatgcgccgctccacaaatagaaacaaaaata |
1275027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 450 - 492
Target Start/End: Complemental strand, 1274868 - 1274825
Alignment:
| Q |
450 |
gagatcgaaaaagagagtacagagtaa-agagagacatcaaatc |
492 |
Q |
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|||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
1274868 |
gagatcgaaaaagaaagtacagagtaacagagagacatcaaatc |
1274825 |
T |
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