View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11575_high_11 (Length: 491)

Name: NF11575_high_11
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11575_high_11
NF11575_high_11
[»] chr8 (2 HSPs)
chr8 (242-482)||(16750272-16750510)
chr8 (91-243)||(16750663-16750815)
[»] chr4 (15 HSPs)
chr4 (260-477)||(7481943-7482160)
chr4 (255-477)||(7128978-7129200)
chr4 (294-433)||(7528096-7528235)
chr4 (260-433)||(7520012-7520185)
chr4 (255-406)||(7714036-7714187)
chr4 (255-433)||(7494340-7494518)
chr4 (242-477)||(7722252-7722487)
chr4 (109-194)||(7129415-7129500)
chr4 (109-194)||(7481638-7481723)
chr4 (119-194)||(7494050-7494125)
chr4 (119-194)||(7519717-7519792)
chr4 (109-185)||(7527757-7527833)
chr4 (109-194)||(7722689-7722774)
chr4 (109-185)||(7714411-7714487)
chr4 (156-194)||(7506351-7506389)


Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 242 - 482
Target Start/End: Complemental strand, 16750510 - 16750272
Alignment:
Q  242 agttatgaggcagagagtaactcattccttcattcgtgaggaaaaagtcataggaagagacgaggaaaagaaggatttgataaagttattgttgaacact 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16750510 agttatgaggcagagagtaactcattccttcattcgtgaggaaaaagtcataggaagagacgacgaaaagaaggatttgataaagttattgttgaacact 16750411  T
Q  342 gacatcgatgtcaaaggaaatgtttcagttatttccatcattggaattggaggacttggaaagaccgcagttgctcaacgtgtgtacaatgataaaaccg 441  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| ||||    
T  16750410 gacatcgatgtcaaaggaaatgtttcagttatttccatcattggaattggaggacttggaaagaccgca-ttgctcaacttgtgtac-atgataagaccg 16750313  T
Q  442 ttcaacagcattttgaattgaaaaagtgggtctgtgctgct 482  Q
    ||||||| ||||||||||||||||||||||| |||| ||||    
T  16750312 ttcaacaacattttgaattgaaaaagtgggtgtgtgttgct 16750272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 91 - 243
Target Start/End: Complemental strand, 16750815 - 16750663
Alignment:
Q  91 ttggatgcagaagaacaacagcagggccccaacaaccataaaattaaactatggttggagaagctcaaagatactcttgatgatgctgatgacttgcttg 190  Q
    |||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  16750815 ttggatgcagaagaacaacagcagggccccaacaactatagaattaaactatgggtggagaagctcaaagatactcttgatgatgctgatgacttgcttg 16750716  T
Q  191 atgatgtttttactgaagacttgtagcgtcaagtactgacaaaagacaagaag 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16750715 atgatgtttttactgaagacttgtagcgtcaagtactgacaaaagacaagaag 16750663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 260 - 477
Target Start/End: Original strand, 7481943 - 7482160
Alignment:
Q  260 aactcattccttcattcgtgaggaaaaagtcataggaagagacgaggaaaagaaggatttgataaagttattgttgaacactgacatcgatgtcaaagga 359  Q
    |||||| ||||| |||||||||||| |||| || |||||||| ||||| ||||| || |||||| |||| ||||| ||||| | || | |||| ||||      
T  7481943 aactcactcctttattcgtgaggaagaagttattggaagagatgaggagaagaaagagttgatagagttgttgtttaacaccggcaacaatgtgaaagag 7482042  T
Q  360 aatgtttcagttatttccatcattggaattggaggacttggaaagaccgcagttgctcaacgtgtgtacaatgataaaaccgttcaacagcattttgaat 459  Q
    ||||||||| ||||||| || |||||||||||||||||||||||||| ||| ||||||||| ||| |||||||| |||   || ||||| |||||| | |    
T  7482043 aatgtttcaattatttctataattggaattggaggacttggaaagactgcacttgctcaacttgtatacaatgacaaagaagtgcaacaacattttcagt 7482142  T
Q  460 tgaaaaagtgggtctgtg 477  Q
    ||||||||||||| ||||    
T  7482143 tgaaaaagtgggtttgtg 7482160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 255 - 477
Target Start/End: Complemental strand, 7129200 - 7128978
Alignment:
Q  255 agagtaactcattccttcattcgtgaggaaaaagtcataggaagagacgaggaaaagaaggatttgataaagttattgttgaacactgacatcgatgtca 354  Q
    |||| |||||| ||||| |||||||||||| |||| || |||||||| ||||| |||||  | |||||| |||| ||||| ||||| | || | |||| |    
T  7129200 agagaaactcactcctttattcgtgaggaagaagttattggaagagatgaggagaagaaaaagttgatagagttgttgtttaacaccggcaacaatgtga 7129101  T
Q  355 aaggaaatgtttcagttatttccatcattggaattggaggacttggaaagaccgcagttgctcaacgtgtgtacaatgataaaaccgttcaacagcattt 454  Q
    |||  ||||||||| ||||||| || |||||||||||||||||||||||||| ||| ||||||||| ||| |||||||| |||   || ||||| |||||    
T  7129100 aagagaatgtttcaattatttctataattggaattggaggacttggaaagactgcacttgctcaacttgtatacaatgacaaagaagtgcaacaacattt 7129001  T
Q  455 tgaattgaaaaagtgggtctgtg 477  Q
    ||| |||||||| ||||| ||||    
T  7129000 tgagttgaaaaaatgggtttgtg 7128978  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 294 - 433
Target Start/End: Original strand, 7528096 - 7528235
Alignment:
Q  294 ggaagagacgaggaaaagaaggatttgataaagttattgttgaacactgacatcgatgtcaaaggaaatgtttcagttatttccatcattggaattggag 393  Q
    |||||||| ||||||||||| || |||||| |||| ||||| ||||||  || | |||| ||||  ||||||||||||||||| || |||||||||||||    
T  7528096 ggaagagatgaggaaaagaaagagttgatagagttgttgtttaacactagcaacaatgtgaaagagaatgtttcagttatttctataattggaattggag 7528195  T
Q  394 gacttggaaagaccgcagttgctcaacgtgtgtacaatga 433  Q
    ||||||||||||| ||| ||||||||  ||| ||||||||    
T  7528196 gacttggaaagactgcacttgctcaatttgtatacaatga 7528235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 260 - 433
Target Start/End: Original strand, 7520012 - 7520185
Alignment:
Q  260 aactcattccttcattcgtgaggaaaaagtcataggaagagacgaggaaaagaaggatttgataaagttattgttgaacactgacatcgatgtcaaagga 359  Q
    |||||| ||||| |||||||  ||| |||| || |||||||| ||||| ||||| || |||||| |||| ||||| ||||||  || | |||| | ||      
T  7520012 aactcactcctttattcgtgcagaagaagttattggaagagaggaggagaagaaagagttgatagagttgttgtttaacactagcaacaatgtgacagag 7520111  T
Q  360 aatgtttcagttatttccatcattggaattggaggacttggaaagaccgcagttgctcaacgtgtgtacaatga 433  Q
    ||||||||||||||||| || |||||||||||||||||||||||||| ||| ||||||||  ||| ||||||||    
T  7520112 aatgtttcagttatttctataattggaattggaggacttggaaagactgcacttgctcaatttgtatacaatga 7520185  T

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Target: chr4; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 255 - 406
Target Start/End: Complemental strand, 7714187 - 7714036
Alignment:
Q  255 agagtaactcattccttcattcgtgaggaaaaagtcataggaagagacgaggaaaagaaggatttgataaagttattgttgaacactgacatcgatgtca 354  Q
    |||| |||||| ||||| |||| ||||||| |||| || |||||||| ||||| ||||| || |||||| |||| ||||| ||||| | || |||||| |    
T  7714187 agagaaactcactcctttattcttgaggaagaagttattggaagagatgaggagaagaaagagttgatagagttgttgtttaacaccggcaacgatgtga 7714088  T
Q  355 aaggaaatgtttcagttatttccatcattggaattggaggacttggaaagac 406  Q
    | |  ||||||||||||||||| || |||||||| |||||||||||||||||    
T  7714087 aggagaatgtttcagttatttctataattggaatcggaggacttggaaagac 7714036  T

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Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 255 - 433
Target Start/End: Original strand, 7494340 - 7494518
Alignment:
Q  255 agagtaactcattccttcattcgtgaggaaaaagtcataggaagagacgaggaaaagaaggatttgataaagttattgttgaacactgacatcgatgtca 354  Q
    |||| |||||| ||||| |||||||||||| |||| || |||||||| ||||| |||||  | |||||| |||| ||||| ||||| | || | |||| |    
T  7494340 agagaaactcactcctttattcgtgaggaagaagttattggaagagatgaggagaagaaaaagttgatagagttgttgtttaacaccggcaacaatgtga 7494439  T
Q  355 aaggaaatgtttcagttatttccatcattggaattggaggacttggaaagaccgcagttgctcaacgtgtgtacaatga 433  Q
    |||  ||||||||||||||||| || |||||||| |||||||| || ||||| ||  ||||||||  ||| ||||||||    
T  7494440 aagagaatgtttcagttatttctataattggaatcggaggactggggaagactgcgcttgctcaatttgtatacaatga 7494518  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 242 - 477
Target Start/End: Complemental strand, 7722487 - 7722252
Alignment:
Q  242 agttatgaggcagagagtaactcattccttcattcgtgaggaaaaagtcataggaagagacgaggaaaagaaggatttgataaagttattgttgaacact 341  Q
    |||| |||| || |||| ||||||||| || ||||| |||||| |||| || ||||||||  |||| ||||| ||  ||||| |||| ||||| |||||     
T  7722487 agttttgagacaaagagaaactcattcttttattcgcgaggaagaagttattggaagagataaggagaagaaagagctgatagagttgttgtttaacacc 7722388  T
Q  342 gacatcgatgtcaaaggaaatgtttcagttatttccatcattggaattggaggacttggaaagaccgcagttgctcaacgtgtgtacaatgataaaaccg 441  Q
    | || | || | ||||  ||||||||||||||||| || ||||||||||||||||| |||||||| ||  ||||||||| ||| |||   || |||   |    
T  7722387 ggcaacaatttgaaagagaatgtttcagttatttctataattggaattggaggactcggaaagactgcgcttgctcaacttgtatacggcgacaaagaag 7722288  T
Q  442 ttcaacagcattttgaattgaaaaagtgggtctgtg 477  Q
    | ||||| |||||||| |||||||| ||||| ||||    
T  7722287 tgcaacaacattttgagttgaaaaaatgggtttgtg 7722252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 7129500 - 7129415
Alignment:
Q  109 cagcagggccccaacaaccataaaattaaactatggttggagaagctcaaagatactcttgatgatgctgatgacttgcttgatga 194  Q
    ||||||||  ||||||||||| || || |||| |||||||| |||||||| ||| ||||||||||||| |||||||||||||||||    
T  7129500 cagcagggagccaacaaccatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatga 7129415  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 7481638 - 7481723
Alignment:
Q  109 cagcagggccccaacaaccataaaattaaactatggttggagaagctcaaagatactcttgatgatgctgatgacttgcttgatga 194  Q
    ||||||||  ||||||||||| || || |||| ||| |||| |||||||||||| ||||||||||||| ||||||||||| |||||    
T  7481638 cagcagggaaccaacaaccatcaagttcaactctggctggaaaagctcaaagatgctcttgatgatgccgatgacttgctcgatga 7481723  T

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Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 7494050 - 7494125
Alignment:
Q  119 ccaacaaccataaaattaaactatggttggagaagctcaaagatactcttgatgatgctgatgacttgcttgatga 194  Q
    ||||||||||| || || |||| |||||||| ||||| |||||| ||||||||||||| ||||||||||| |||||    
T  7494050 ccaacaaccatcaagttcaactgtggttggaaaagctgaaagatgctcttgatgatgccgatgacttgctcgatga 7494125  T

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Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 7519717 - 7519792
Alignment:
Q  119 ccaacaaccataaaattaaactatggttggagaagctcaaagatactcttgatgatgctgatgacttgcttgatga 194  Q
    ||||||||||| || || |||| |||||||| ||||| |||||| ||||||||||||| ||| |||||||||||||    
T  7519717 ccaacaaccatcaagttcaactgtggttggaaaagctgaaagatgctcttgatgatgccgataacttgcttgatga 7519792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 109 - 185
Target Start/End: Original strand, 7527757 - 7527833
Alignment:
Q  109 cagcagggccccaacaaccataaaattaaactatggttggagaagctcaaagatactcttgatgatgctgatgactt 185  Q
    ||||||||| ||||||||||| || || |||||||| |||| || ||||||||| || |||||||||| ||||||||    
T  7527757 cagcagggcaccaacaaccatcaagttcaactatggctggaaaatctcaaagatgcttttgatgatgccgatgactt 7527833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 109 - 194
Target Start/End: Complemental strand, 7722774 - 7722689
Alignment:
Q  109 cagcagggccccaacaaccataaaattaaactatggttggagaagctcaaagatactcttgatgatgctgatgacttgcttgatga 194  Q
    ||||||||  ||||||||||| || || |||| ||| | || || ||||||||| ||||||||||||| |||||| ||||||||||    
T  7722774 cagcagggaaccaacaaccatcaagttcaactctggcttgaaaatctcaaagatgctcttgatgatgccgatgacgtgcttgatga 7722689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 185
Target Start/End: Complemental strand, 7714487 - 7714411
Alignment:
Q  109 cagcagggccccaacaaccataaaattaaactatggttggagaagctcaaagatactcttgatgatgctgatgactt 185  Q
    ||||||||  ||||||||||| || || |||||||| |||| || ||||||||| ||||| ||||||| ||||||||    
T  7714487 cagcagggagccaacaaccatgaagttcaactatggctggaaaatctcaaagatgctctttatgatgccgatgactt 7714411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 194
Target Start/End: Original strand, 7506351 - 7506389
Alignment:
Q  156 caaagatactcttgatgatgctgatgacttgcttgatga 194  Q
    ||||||| ||||||||||||||||||||||||| |||||    
T  7506351 caaagatgctcttgatgatgctgatgacttgctcgatga 7506389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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