View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_high_15 (Length: 463)
Name: NF11575_high_15
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 444
Target Start/End: Complemental strand, 5351605 - 5351169
Alignment:
| Q |
1 |
atcagcagcaagaatcttttgacgaaaagcttcaacttcagctggaaaattcccttctatctctagatcagtgttcaacatttgtagatttgaaatatca |
100 |
Q |
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| T |
5351605 |
atcagcagcaagaatcttttgacgaaaagcttcaacttcagctggaaaattcccttctatctctagatcagtgttcaacattggtaaagttgaaatatca |
5351506 |
T |
|
| Q |
101 |
atgtactcaatatcaacaccctcaaccacatttttgctcagctcaatcgctaccctcgtcgataataatcaaaatcaaattagcaaaaccaattaatcaa |
200 |
Q |
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| T |
5351505 |
atgtactcaatatcaacaccctcaaccacatttttgctcagctcaatcgctaccctcgtcgattataatcaaaatcaaattagaaaaacaaattcatcaa |
5351406 |
T |
|
| Q |
201 |
tgcacgttaaacaaattaatagattgattgactaaaacaatgtaaattaaaagaaataaaaatattgtttaatgagaccagtg-cacagtttcgtcgtta |
299 |
Q |
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| T |
5351405 |
tgcacg-taaacaaattaatataacaatcgactaaaacaatataaattaaaagaaataaaaatttcgttgaatgagatcaatgtgtcagtttcgtcgtta |
5351307 |
T |
|
| Q |
300 |
aacagtttttcc--nnnnnnnnncaactaacgatgaaactgacgcacactgatctcattcaaccagaatggatgtaagaagtaggaaccaaccagaacgg |
397 |
Q |
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| T |
5351306 |
gactttttttccaaaaaaaaaaacaactaac---------gacgcacagtggtctcattcaactagaatgaatgtaagaagtaggaaccaaccagaacgg |
5351216 |
T |
|
| Q |
398 |
atgagaccggtgttataagaagcttttcgaatagaaccagagatagc |
444 |
Q |
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| T |
5351215 |
atgagaccggtgttataagaagcttttcgaagagaaccagagatagc |
5351169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 9 - 154
Target Start/End: Complemental strand, 5343812 - 5343670
Alignment:
| Q |
9 |
caagaatcttttgacgaaaagcttcaacttcagctggaaaattcccttctatctctagatcagtgttcaacatttgtagatttgaaatatcaatgtactc |
108 |
Q |
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| T |
5343812 |
caagaatctttttccgaaaggattcaacttcaactggataagtcccttctttctcaagatcagtgttcaacaatggtagatttgaaatattaacatattc |
5343713 |
T |
|
| Q |
109 |
aatatcaacaccctcaaccacatttttgctcagctcaatcgctacc |
154 |
Q |
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| T |
5343712 |
aatatgaacaccct---ccacatttttgctcaactcaatagctacc |
5343670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 5325523 - 5325669
Alignment:
| Q |
9 |
caagaatcttttgacgaaaagcttcaacttcagctggaaaattcccttctatctctagatcagtgttcaacatttgtagatttgaaatatcaatgtactc |
108 |
Q |
| |
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|||||||||| |||||||| |||||||||||||| |||||| | |||||| |||| |||||||||||||||||| | | ||||||| |||||||||||| |
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| T |
5325523 |
caagaatcttatgacgaaatgcttcaacttcagcaggaaaagttccttctttctcaagatcagtgttcaacattggcaagtttgaaagatcaatgtactc |
5325622 |
T |
|
| Q |
109 |
aatatcaacaccctcaaccacatttttgctcagctcaatcgctaccc |
155 |
Q |
| |
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|| | | ||| |||| ||| ||||||| |||||||| ||||||| |
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| T |
5325623 |
gatttggataccatcaataacacttttgcttagctcaatagctaccc |
5325669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 372 - 438
Target Start/End: Complemental strand, 5343579 - 5343513
Alignment:
| Q |
372 |
taagaagtaggaaccaaccagaacggatgagaccggtgttataagaagcttttcgaatagaaccaga |
438 |
Q |
| |
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|||||||||||||| ||||||||||||||||||| ||||| |||||||||||||| | ||||||||| |
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| T |
5343579 |
taagaagtaggaactaaccagaacggatgagaccagtgttgtaagaagcttttcggagagaaccaga |
5343513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 22 - 106
Target Start/End: Original strand, 5339480 - 5339564
Alignment:
| Q |
22 |
acgaaaagcttcaacttcagctggaaaattcccttctatctctagatcagtgttcaacatttgtagatttgaaatatcaatgtac |
106 |
Q |
| |
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||||||| ||||||||||| |||||| |||||||| ||| |||||||||||||||| | | | ||| |||||||||| |||| |
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| T |
5339480 |
acgaaaatcttcaacttcaagaggaaaagtcccttcttcctcaagatcagtgttcaacaatggcaaattcgaaatatcaacgtac |
5339564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 10 - 116
Target Start/End: Original strand, 14536704 - 14536810
Alignment:
| Q |
10 |
aagaatcttttgacgaaaagcttcaacttcagctggaaaattcccttctatctctagatcagtgttcaacatttgtagatttgaaatatcaatgtactca |
109 |
Q |
| |
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||||||||| || |||||||||||||| || |||| || | ||||| |||| ||||||||||| |||| ||||| |||||||||||||| ||||| |
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| T |
14536704 |
aagaatcttgtggcgaaaagcttcaacaagaggtggataagttccttcattctcaagatcagtgttatacataggtagagttgaaatatcaatgaactca |
14536803 |
T |
|
| Q |
110 |
atatcaa |
116 |
Q |
| |
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|| |||| |
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| T |
14536804 |
atctcaa |
14536810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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