View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_high_17 (Length: 428)
Name: NF11575_high_17
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 58 - 415
Target Start/End: Original strand, 47682856 - 47683219
Alignment:
| Q |
58 |
gagcgcgtgatgtaatgaaaggtagcatcagattctcttagaaaagtccaacgtcatcaagcggacaatactcactggacaatgtgagatactctct--t |
155 |
Q |
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| T |
47682856 |
gagcgcgtgatgcaatgaaaggtagcatcagattctcttagaaaagtccaacgtcatcaagcggacaatactcactggacaatgtgagatactctctgtt |
47682955 |
T |
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| Q |
156 |
ttacgataaagttttt-atcaaaaattggcagctacgcttcccaacaaaacatacacatttctttcccattcttactcacca--ccccactatttcatac |
252 |
Q |
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| T |
47682956 |
ttaccataaagttttttatcaaaaattggcagctacgcttcccaacaagacatacacatttctttcgcattcttactcaccgtcccccactatttcatag |
47683055 |
T |
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| Q |
253 |
tgttggttttaaattaacgtttgttttttctcg--agtttaatttagttggtatgaacaagaacaatgaatgaggtttaaaaataccaatttttattcaa |
350 |
Q |
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| T |
47683056 |
ggttagttttaaattaatctt-gtttcttctcgtgagtttaatttagttggtataaataagaacaatgaataagatttaaaaagatcaatttttattcaa |
47683154 |
T |
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| Q |
351 |
ttaaagaattaaatatccttctaatcccgtatatacaatgtgagaaattttcctttgttgttgtt |
415 |
Q |
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|||||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47683155 |
ttaaagaattaaatgtccgtctaatcccatatatacaatgtgagaaattttcctttgttgttgtt |
47683219 |
T |
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