View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_high_18 (Length: 426)
Name: NF11575_high_18
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 69 - 255
Target Start/End: Original strand, 17994000 - 17994193
Alignment:
| Q |
69 |
atttatgttgaccaatattaatgnnnnnnnggatctgaattatcttatattttaacatcatcatat-------aacaatagaagattagtataaaaataa |
161 |
Q |
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| T |
17994000 |
atttatgttgaccaatattaat-aaagaaaggatctgaattattttatattttaacatcatcatattttatgtaacaatagaagattagtataaaaataa |
17994098 |
T |
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| Q |
162 |
tatgaaagggtgctaatattcctttctctaatagtagtctgaacataaatatttttacatgtgaacatatttatcaac-aaaaccgcatgatgtg |
255 |
Q |
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| T |
17994099 |
tatgaaagggtgctaatattcctttctctaatagtagtctgaacataaatatttttacatgtgaacacatttatcaacaaaaaccgcatgatgtg |
17994193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 49 - 224
Target Start/End: Original strand, 18020070 - 18020252
Alignment:
| Q |
49 |
gaatatccattcagtgttaaatttatgttgaccaatattaatgnnnnnnnggatctgaattatcttatattttaacatcatcata-------taacaata |
141 |
Q |
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| T |
18020070 |
gaatttccattcagtgctaaatttatgttgaccaatattaat-aaagaaaggatctgaattattttatattttaacatcatcatattttatgtaacaata |
18020168 |
T |
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| Q |
142 |
gaaga-ttagtataaaaataatatgaaaggg-----tgctaatattcctttctctaatagtagtctgaacataaatatttttacatgtg |
224 |
Q |
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| T |
18020169 |
taagatttagcataaaaataatatgaaagggtatattgctaatattcctttctc-----atagtctgaacataactacttttacatgtg |
18020252 |
T |
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