View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_high_19 (Length: 421)
Name: NF11575_high_19
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_high_19 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 264 - 405
Target Start/End: Original strand, 927570 - 927711
Alignment:
| Q |
264 |
ttggaattacaagaaatattgtcaattttattaataggaaaagagtgaacttcatcaagaaccagagcgtgcgttcaccagcaatctctatggaccatcc |
363 |
Q |
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| T |
927570 |
ttggaattacaagaaatattgtcaattttattaataggaaaagagtgaacttcatcaagaaccagagcgtgcgttcaccagcaatctctatggaccatcc |
927669 |
T |
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| Q |
364 |
acttgatcacccaaacaaatcatcctctaggttgtcatatct |
405 |
Q |
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| T |
927670 |
acttgatcacccaaacaaatcatcctctaggttgtcatatct |
927711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 927187 - 927387
Alignment:
| Q |
1 |
ctgtgtgtgcaatattgggttgagtttcaatcatagtgattatatttgaacatgaaaagaaatctcatatttaaag---aatactactagcaacacatat |
97 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| ||| || |
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| T |
927187 |
ctgtatgtgcaatattgggttgagtttcaatcatagtgattatatttgaacatgaaaagaaatctcatatttgaagaataatactactagcaatacacat |
927286 |
T |
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| Q |
98 |
tttaacatacactttccaacatattt---actatagtccaaac--atctactatagtcatctaaaatggtgagaaaatatttatgtccatgaacataatt |
192 |
Q |
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| T |
927287 |
tttaacacatactttccaacatatttacaactatagtccaaacatatctactatagtcatctaaaatggtgagaaaatatttatgtccatgaacataatt |
927386 |
T |
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| Q |
193 |
a |
193 |
Q |
| |
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| |
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| T |
927387 |
a |
927387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 118
Target Start/End: Original strand, 21281461 - 21281494
Alignment:
| Q |
85 |
tagcaacacatattttaacatacactttccaaca |
118 |
Q |
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| T |
21281461 |
tagcaacacatattttaacatacacttttcaaca |
21281494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 14814843 - 14814805
Alignment:
| Q |
148 |
gtcatctaaaatggtgagaaaatatttatgtccatgaac |
186 |
Q |
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| T |
14814843 |
gtcatctaaaatggtgagaaaatatctatgaccatgaac |
14814805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 149 - 183
Target Start/End: Complemental strand, 11924308 - 11924274
Alignment:
| Q |
149 |
tcatctaaaatggtgagaaaatatttatgtccatg |
183 |
Q |
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| T |
11924308 |
tcatctaaaatggtgagaaaatatttatgaccatg |
11924274 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 5239385 - 5239347
Alignment:
| Q |
148 |
gtcatctaaaatggtgagaaaatatttatgtccatgaac |
186 |
Q |
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| T |
5239385 |
gtcatctaaaatggtgagaaaatatctatgaccatgaac |
5239347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 10652781 - 10652745
Alignment:
| Q |
149 |
tcatctaaaatggtgagaaaatatttatgtccatgaa |
185 |
Q |
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| T |
10652781 |
tcatctaaaatggtgagaaaatatctatgaccatgaa |
10652745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 149 - 185
Target Start/End: Complemental strand, 10866926 - 10866890
Alignment:
| Q |
149 |
tcatctaaaatggtgagaaaatatttatgtccatgaa |
185 |
Q |
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|||||||||||||||||||||||| |||| ||||||| |
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| T |
10866926 |
tcatctaaaatggtgagaaaatatctatgaccatgaa |
10866890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 82 - 118
Target Start/End: Complemental strand, 27072973 - 27072937
Alignment:
| Q |
82 |
tactagcaacacatattttaacatacactttccaaca |
118 |
Q |
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||||||||||||||||||||||| ||||||| ||||| |
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| T |
27072973 |
tactagcaacacatattttaacacacacttttcaaca |
27072937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 84 - 112
Target Start/End: Complemental strand, 31042459 - 31042431
Alignment:
| Q |
84 |
ctagcaacacatattttaacatacacttt |
112 |
Q |
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| T |
31042459 |
ctagcaacacatattttaacatacacttt |
31042431 |
T |
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