View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11575_high_2 (Length: 929)
Name: NF11575_high_2
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_high_2 |
 | |
|
| [»] scaffold0148 (1 HSPs) |
| | |
|
| [»] scaffold0280 (2 HSPs) |
| | |
|
Alignment Details
Target: scaffold0148 (Bit Score: 768; Significance: 0; HSPs: 1)
Name: scaffold0148
Description:
Target: scaffold0148; HSP #1
Raw Score: 768; E-Value: 0
Query Start/End: Original strand, 23 - 913
Target Start/End: Original strand, 27292 - 28188
Alignment:
| Q |
23 |
gcggccgtgaagctaaggtgaccttggcccgttgtagtattgcatctaaagttgaagtatgcgaggtctccacagttgggtccggtactgagaggataag |
122 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27292 |
gcggccgtgaagctaaggtgaccttggcctgttgtggtattgcatctaaagttgaagtatgcgaggtctccacagttgggtccggtactgagaggataag |
27391 |
T |
|
| Q |
123 |
ggactgtgtttgtaccacagggctcacaagttcttggagttggttctacaaaaatgaataaaaggaatcttcagaatcatgaatttgtttctaattttat |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27392 |
ggactgtgtttgtaccacagggctcacaagttcttggagttggttctacaaaaatgaataaaaggaattttcagaatcatgaatttgtttctaattttat |
27491 |
T |
|
| Q |
223 |
atnnnnnnnnnngaagagagaaatatgtctctaatttaatcatcatatgcatacctatgtctaatttatcaactaggataatgagtctacgatcatcatc |
322 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27492 |
ataaaaaaagaagaagagagaaatatgtctctaatttaatcatcatatgcatacctatgtctaatttatcaactaggataatgagtctacgatcatcatc |
27591 |
T |
|
| Q |
323 |
ccaactagtatactcttctttaagagtagttaaactttgtgtccagatccaacagtttgaaggaataagaccacgcagctgcttatcagggacctgagca |
422 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |
|
|
| T |
27592 |
ccaactagtatactcttctttaagagtagttaaactgtgtgtccagatccaacagtttgaaggaataagaccacgctgctgcttatcagggacttgagca |
27691 |
T |
|
| Q |
423 |
tatgagtaagcctggcactgtg------gacacatcccatggcacaaatctgcgcannnnnnnngagattccacggttgcctttttatctggctttcctg |
516 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||| |
|
|
| T |
27692 |
tatgagtaagcctggcactgtgactgtggacacatcccatggcacaaatctgcgcattttttttgagattccacggttacctttatatctggccttcctg |
27791 |
T |
|
| Q |
517 |
ttttaatcatggtcaagttcaagaacttcatgtcattttcagaacagaatgttgtttttctcctcgtacaatgtcgtgaagaatcttcctctccctggtt |
616 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27792 |
ttttaatcatggtcaagttcaagaacttcgtgtcattttcagtacagaatgttgtttttctcctcgtacaatgtcgtgaagaatcttcctctccctggtt |
27891 |
T |
|
| Q |
617 |
atcattgtagaatcctggtaaacatttgcaaacgctatcatcgtcattacagctagcaaagtttccacaagcattatatgttaaacatttgcttcttggc |
716 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27892 |
atcattgtagaatcctggtaaacatttgcaaacgctatcatcgtcattacagctagcaaagtttccacaagcattatatgttaaacatttgcttcttggc |
27991 |
T |
|
| Q |
717 |
tgcttccatataactggcaaatcatcttccacccactgtatcacacctgtcgaattgaggaacaatcttttattgttatactgttcgttacgaattactg |
816 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27992 |
tgcttccatataactagcaaatcatcttccacccactgtatcacacctgtggaattgaggaacaatcttttattgttatactgttcgttacgaattactg |
28091 |
T |
|
| Q |
817 |
atctgttccgtttttcaggtgaactgaatttgtttgacgaattataaacaagaaaactgaagttggtcaacaaattataaacctcaaagctgatgtc |
913 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28092 |
atctgttccgtttttcaggtgaactgaatttgtttgacgaattataaacaagaaaactgaagttggtcaacaaattataaacctcaaagctgatgtc |
28188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 101; Significance: 1e-49; HSPs: 2)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 252 - 384
Target Start/End: Original strand, 2485 - 2617
Alignment:
| Q |
252 |
tctaatttaatcatcatatgcatacctatgtctaatttatcaactaggataatgagtctacgatcatcatcccaactagtatactcttctttaagagtag |
351 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||| ||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
2485 |
tctaatttaatcatcacatgcatacctacctctgatttatcaactaggacaatgagtctacgatcataatcccaattagtatactcttctttaagagtag |
2584 |
T |
|
| Q |
352 |
ttaaactttgtgtccagatccaacagtttgaag |
384 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
2585 |
ttaaactttgtgtccagatccaacaatttgaag |
2617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280; HSP #2
Raw Score: 90; E-Value: 5e-43
Query Start/End: Original strand, 62 - 195
Target Start/End: Original strand, 2174 - 2307
Alignment:
| Q |
62 |
ttgcatctaaagttgaagtatgcgaggtctccacagttgggtccggtactgagaggataagggactgtgtttgtaccacagggctcacaagttcttggag |
161 |
Q |
| |
|
|||||||||||||||||||||| || |||| ||||| |||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
2174 |
ttgcatctaaagttgaagtatgtgaagtctgcacagatgggtctggtattgagaggataagggactgtgtttgtaccacaaggctcacaagttcttggag |
2273 |
T |
|
| Q |
162 |
ttggttctacaaaaatgaataaaaggaatcttca |
195 |
Q |
| |
|
||||| || |||| || ||||||||||||||||| |
|
|
| T |
2274 |
ttggtgctgcaaatatcaataaaaggaatcttca |
2307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University