View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11575_high_22 (Length: 415)
Name: NF11575_high_22
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_high_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 160 - 400
Target Start/End: Complemental strand, 30076526 - 30076286
Alignment:
| Q |
160 |
tacacaaatttttcatcaaacgacttagatttcccactacattaattcatgatgggcatagtctccggtggataagtttattatttctctcaccgtaagc |
259 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30076526 |
tacacaaatttttcatcaaacgacttagatttcccactacattaattcatgatgggcatagtctccggtggataagtttattatttctctcaccgtaagc |
30076427 |
T |
|
| Q |
260 |
actgtagcaatgagttaccgttcgatgatcttggttgtccattattttaatattatatcgcatggnnnnnnnctcactcatttataatgagagacatgat |
359 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||||| |
|
|
| T |
30076426 |
actgtagcaatgagttaccgttcaacgatcttggttgtccattactttaatattatatcgcatggaaaaaaactcactcacttatagtgagagacatgat |
30076327 |
T |
|
| Q |
360 |
aaactcatccacccgagactaagcctcttttgtgtcctatg |
400 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30076326 |
aaactcatccaccggagactaagcctcttttgtgtcctatg |
30076286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 30077276 - 30077109
Alignment:
| Q |
1 |
gtaaatttggaaacctagatgtgtgacttggattctcaatagcaaggagaattatgcattcacgtaatctagattaatgaaaatcgttaattatagtcat |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
30077276 |
gtaaatttggaaatctagatgtgtgacttggattctcaatagcaaggagaattatgcattcacgtaatatagattaacgaaaatcgttaattatagtcat |
30077177 |
T |
|
| Q |
101 |
acgatgaagagtattttacttgtatgtatgttttaaaatgtaactcaaactacaaaccatacacaaat |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
30077176 |
acgatgaagagtattttacttgtatgtatgttttaaaatgtaactcaaactataaaccatacacaaat |
30077109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University