View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11575_high_24 (Length: 391)

Name: NF11575_high_24
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11575_high_24
NF11575_high_24
[»] chr2 (12 HSPs)
chr2 (1-379)||(12258581-12258962)
chr2 (9-365)||(12245414-12245774)
chr2 (33-363)||(7542028-7542362)
chr2 (1-365)||(12234489-12234857)
chr2 (1-365)||(11999207-11999562)
chr2 (1-365)||(14703208-14703576)
chr2 (51-340)||(16657567-16657860)
chr2 (1-157)||(43625424-43625580)
chr2 (25-171)||(16662016-16662162)
chr2 (263-341)||(43625236-43625314)
chr2 (219-337)||(16662214-16662332)
chr2 (29-130)||(17717979-17718080)
[»] chr4 (4 HSPs)
chr4 (15-363)||(35132259-35132602)
chr4 (222-342)||(30775075-30775195)
chr4 (1-163)||(30775258-30775420)
chr4 (51-118)||(9335941-9336008)
[»] chr5 (1 HSPs)
chr5 (18-363)||(28219720-28220069)
[»] chr7 (20 HSPs)
chr7 (15-365)||(27830889-27831243)
chr7 (1-337)||(3147092-3147432)
chr7 (25-351)||(8585730-8586060)
chr7 (218-337)||(8616509-8616628)
chr7 (249-351)||(17267753-17267855)
chr7 (49-346)||(8659182-8659483)
chr7 (25-115)||(1301514-1301604)
chr7 (1-95)||(8646951-8647045)
chr7 (21-370)||(6789307-6789660)
chr7 (252-341)||(17260065-17260154)
chr7 (265-346)||(1301279-1301360)
chr7 (15-131)||(8559371-8559487)
chr7 (1-115)||(8654504-8654618)
chr7 (27-136)||(8636369-8636478)
chr7 (228-364)||(8646678-8646814)
chr7 (15-95)||(17260315-17260395)
chr7 (25-92)||(8628609-8628676)
chr7 (15-94)||(17268014-17268093)
chr7 (15-96)||(8602047-8602128)
chr7 (254-339)||(8654276-8654361)
[»] chr8 (2 HSPs)
chr8 (49-363)||(43744618-43744936)
chr8 (22-133)||(12528540-12528651)
[»] chr1 (6 HSPs)
chr1 (9-171)||(15595032-15595194)
chr1 (1-171)||(34466793-34466963)
chr1 (271-341)||(4678831-4678901)
chr1 (26-115)||(4678583-4678672)
chr1 (249-338)||(52549264-52549353)
chr1 (261-300)||(34467049-34467088)
[»] chr6 (1 HSPs)
chr6 (19-96)||(28910655-28910732)


Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 12258581 - 12258962
Alignment:
Q  1 tgtctctactaaccattaaggataatgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagtta 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12258581 tgtctctactaaccattaaggataatgtctttcaagttaaggctacagctggaaacacgcaccttggaggagaggactttgataatagaatggtgagtta 12258680  T
Q  101 ctttgtagaagagttaaagagaaagaacaaagtagatataagtggaaatccaagagctttgaggagattgaaaacag----tgagagtgcaaaaagatca 196  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||    
T  12258681 ctttgtagaagagttcaagagaaagaacaaagtagatataagtggaaatccaagagctttgaggagattgaaaacagcttgtgagagtgcaaaaagatca 12258780  T
Q  197 ctttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaata 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||     
T  12258781 ctttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcatcaatcaatcgtgccaagtttgaggaaataaatt 12258880  T
Q  297 tggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgtatgatgatgt 379  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  12258881 tggaacttttcaatgaatgcatgaagactgttgagagttgtcttacggatgctaacacggacaagagtaatgta-gatgatgt 12258962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 9 - 365
Target Start/End: Original strand, 12245414 - 12245774
Alignment:
Q  9 ctaaccattaaggataatgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagttactttgtag 108  Q
    ||||| |||||||||||  |||| ||||||||||| || ||||||||||| ||||||||| ||||||| ||||||||||||||||| |  ||||||| |     
T  12245414 ctaactattaaggataacatcttccaagttaaggccactgctggaaacactcaccttggaggagaggattttgataatagaatggtaaactactttgcac 12245513  T
Q  109 aagagttaaagagaaagaacaaagtagatataagtggaaatccaagagctttgaggagattgaaaac----agtgagagtgcaaaaagatcactttctta 204  Q
    | ||||| ||||||||||||||| | ||||| |||| || | ||| ||| ||||||||||||| |||     ||||||| |||||||||  |||||| |     
T  12245514 aggagttcaagagaaagaacaaattggatattagtgcaagttcaaaagccttgaggagattgagaactgcttgtgagagggcaaaaagaatactttcgtt 12245613  T
Q  205 tcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaactt 304  Q
    |||||||||||||||||||||| |||||||||||| | | ||||||||||||||| | || |||||||| || |||||||||||| | ||| | || |||    
T  12245614 tcttgttgttgcaactattgaggtagattctttatttcaaggcattgatttttcttcatccatcaatcgggcaaagtttgaggaattgaatttagatctt 12245713  T
Q  305 ttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagta 365  Q
     | ||||| || || |||||||||||||||||| |||  ||||| || | |||||||||||    
T  12245714 cttaatgattgtataaagactgttgagagttgtattatggatgcaaagatggacaagagta 12245774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 33 - 363
Target Start/End: Complemental strand, 7542362 - 7542028
Alignment:
Q  33 caagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagttactttgtagaagagttaaagagaaagaacaaag 132  Q
    ||||||||||| || ||||| ||||| ||||||||  |||| ||||||||||||||||||| ||  ||||||||| ||||||| ||||||||||||||||    
T  7542362 caagttaaggccactgctggcaacactcaccttggtggagaagactttgataatagaatggcgaactactttgtacaagagttcaagagaaagaacaaag 7542263  T
Q  133 tagatataagtggaaatccaagagctttgaggagattgaaaac----agtgagagtgcaaaaagatcactttcttatcttgttgttgcaactattgagat 228  Q
    | || || ||||| ||||||| ||| |||||||| |||| |||     ||||||| |||||||||||||||||||  ||||||||||| ||||||||| |    
T  7542262 tggacattagtgggaatccaaaagccttgaggaggttgagaactgcttgtgagagggcaaaaagatcactttctttccttgttgttgccactattgaggt 7542163  T
Q  229 agattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgtt 328  Q
    ||||||||||| | | |||||||| |||||| | || |||||| | |||||||||||||| || |||||||| ||||| || || || |||| || ||||    
T  7542162 agattctttatttcaaggcattgacttttcttcatcgatcaatagggccaagtttgaggagatgaatatggatctttttaacgagtgtatgacgattgtt 7542063  T
Q  329 gagagttgtcttaccgatgctaacacggacaagag 363  Q
    |  || |||||||  |||||||| | |||||||||    
T  7542062 ggaagctgtcttattgatgctaatatggacaagag 7542028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 12234857 - 12234489
Alignment:
Q  1 tgtctctactaaccattaaggataatgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagtta 100  Q
    ||||||| ||||| || || | ||||||||| |||||||| || ||||| |||||||| ||||| ||  |||||||||||||||| |||||||| |  ||    
T  12234857 tgtctctcctaacaatcaaaggtaatgtcttccaagttaaagccacagccggaaacactcacctcgggggagaggactttgataacagaatggtaaacta 12234758  T
Q  101 ctttgtagaagagttaaagagaaagaacaaagtagatataagtggaaatccaagagctttgaggagattgaaaacag----tgagagtgcaaaaagatca 196  Q
    | |||   ||||||| || |||||||| ||||| || || ||||||||||||| ||| |||||||| || | ||| |    |||||| ||||||||||||    
T  12234757 ccttgctcaagagttcaatagaaagaaaaaagtggacatgagtggaaatccaaaagccttgaggaggttaagaactgcttgtgagagggcaaaaagatca 12234658  T
Q  197 ctttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaata 296  Q
     | ||||  |||||||||||||| |||||| |||||||||||| ||| ||||||||||||||| | || |||||| | ||||||||||||||||| ||||    
T  12234657 ttgtctttccttgttgttgcaaccattgaggtagattctttatttgaaggcattgatttttcttcatcgatcaatagggccaagtttgaggaaatgaata 12234558  T
Q  297 tggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagta 365  Q
    |||| ||| | | ||| || ||||||| |||||||||||||||||  |||||||| | |||||| ||||    
T  12234557 tggatcttcttattgagtgtatgaagattgttgagagttgtcttagtgatgctaagatggacaaaagta 12234489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 11999562 - 11999207
Alignment:
Q  1 tgtctctactaaccattaaggataatgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagtta 100  Q
    ||||| ||||||| |||||||| |||||||| ||||||||||| |||||||||||||| ||| | ||| ||||||| ||||||||||                 
T  11999562 tgtctatactaacaattaaggacaatgtcttccaagttaaggccacagctggaaacactcacttcggaggagaggattttgataata------------- 11999476  T
Q  101 ctttgtagaagagttaaagagaaagaacaaagtagatataagtggaaatccaagagctttgaggagattgaaaacag----tgagagtgcaaaaagatca 196  Q
    ||||||| ||||||| |||| ||||||| |||| ||||| ||||||| | ||| ||| |||||||| |||| ||| |    |||||| |||||||||  |    
T  11999475 ctttgtacaagagttcaagataaagaacgaagtggatattagtggaagttcaaaagccttgaggaggttgagaactgcttgtgagagggcaaaaagaata 11999376  T
Q  197 ctttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaata 296  Q
    || || | |||||||||||||||||||||| |||||||||||| | | ||||||||||||||| | || |||||||| || |||||||||||| | |||     
T  11999375 ctatcatttcttgttgttgcaactattgaggtagattctttatttcaaggcattgatttttcttcatccatcaatcgggcaaagtttgaggaattgaatt 11999276  T
Q  297 tggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagta 365  Q
    | || ||| | ||||| || || |||||||||||||||||| |||  ||||| || | |||||||||||    
T  11999275 tagatcttcttaatgattgtataaagactgttgagagttgtattatggatgcaaagatggacaagagta 11999207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 14703576 - 14703208
Alignment:
Q  1 tgtctctactaaccattaaggataatgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagtta 100  Q
    ||||||| ||||| |||||||  |  ||||| ||| |||||||||| ||||||||||| ||||| ||  |||||||||| ||||| ||||||||||  ||    
T  14703576 tgtctctcctaacaattaagggcaccgtcttccaaattaaggctactgctggaaacactcacctcgggggagaggacttcgataacagaatggtgaacta 14703477  T
Q  101 ctttgtagaagagttaaagagaaagaacaaagtagatataagtggaaatccaagagctttgaggagattgaaaacagt----gagagtgcaaaaagatca 196  Q
    ||||||  ||||||| |||||||| |||| | | || || ||||||||||||| ||| || ||||| |||| ||| |     ||||| ||||||||| ||    
T  14703476 ctttgttcaagagttcaagagaaaaaacagattggacattagtggaaatccaaaagccttaaggagcttgagaaccgcttgcgagagggcaaaaagaaca 14703377  T
Q  197 ctttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaata 296  Q
    |||||||  |  ||||| || ||||||||| ||||| |||||| | |  ||||||| |||||| | || |||||| | ||||||||||| ||||| ||||    
T  14703376 ctttctttccaagttgtcgccactattgaggtagatgctttatttcaatgcattgacttttcttcatcgatcaatagggccaagtttgaagaaatgaata 14703277  T
Q  297 tggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagta 365  Q
    ||||  |||| ||||| ||  |||||| |||||||||||||||||  |||||||| | |||||||||||    
T  14703276 tggacttttttaatgagtgtgtgaagattgttgagagttgtcttattgatgctaagatggacaagagta 14703208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 51 - 340
Target Start/End: Original strand, 16657567 - 16657860
Alignment:
Q  51 ggaaacacgcaccttggaagagaggactttgataatagaatggtgagttactttgtagaagagttaaagagaaagaacaaagtagatataagtggaaatc 150  Q
    |||||||| ||||||||  |||||||||||||||| |||| |||||  ||||||||||| |||||  | |  ||||| || || || |||||||| ||      
T  16657567 ggaaacactcaccttgggggagaggactttgataacagaacggtgaactactttgtagaggagtttcaaaagaagaataaggtggacataagtgggaact 16657666  T
Q  151 caagagctttgaggagattgaaaacag----tgagagtgcaaaaagatcactttcttatcttgttgttgcaactattgagatagattctttatgtgatgg 246  Q
    ||||||| |||||||| |||| ||| |    |||||| ||||| ||  |||| |||| |  | ||||  | ||| ||||| |||||||||||| | | ||    
T  16657667 caagagccttgaggaggttgagaactgcatgtgagagggcaaagaggacactctcttttgcttttgtcaccactgttgaggtagattctttatttcaggg 16657766  T
Q  247 cattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtctt 340  Q
     ||||| |||||| | |||||||  |||||||||||||||||||| |||||||| ||||||||||| || ||||| |||||||||| |||||||    
T  16657767 aattgacttttcttcatcaatcacccgtgccaagtttgaggaaattaatatggatcttttcaatgagtgtatgaaaactgttgagaattgtctt 16657860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 43625580 - 43625424
Alignment:
Q  1 tgtctctactaaccattaaggataatgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagtta 100  Q
    ||||| |||| || |||||||| || ||||| |  ||||| || || ||||||||||| ||||||||| |||||||||||||| ||||||||||||  ||    
T  43625580 tgtctatacttacaattaaggacaaggtcttccgtgttaaagccactgctggaaacactcaccttggaggagaggactttgatgatagaatggtgaacta 43625481  T
Q  101 ctttgtagaagagttaaagagaaagaacaaagtagatataagtggaaatccaagagc 157  Q
    ||||| |||||| ||  |||  |||||||| || ||||| | ||||||  |||||||    
T  43625480 ctttgcagaagaatttgagaagaagaacaatgtggatattattggaaactcaagagc 43625424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 171
Target Start/End: Original strand, 16662016 - 16662162
Alignment:
Q  25 atgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagttactttgtagaagagttaaagagaaa 124  Q
    |||||||| ||||||| || ||  |||||||||| ||||| ||  |||||||||||||||| |||||| |||  ||||||||  |||| || || || ||    
T  16662016 atgtctttgaagttaaagccacttctggaaacactcacctcgggggagaggactttgataacagaatgttgaactactttgtgaaagaatttaataggaa 16662115  T
Q  125 gaacaaagtagatataagtggaaatccaagagctttgaggagattga 171  Q
    ||||||||| ||||| | | | ||||||||||| |||||||| ||||    
T  16662116 gaacaaagtggatatcactaggaatccaagagccttgaggaggttga 16662162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 263 - 341
Target Start/End: Complemental strand, 43625314 - 43625236
Alignment:
Q  263 tcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtctta 341  Q
    ||||||| ||||||||| ||||| |||||||||||||| |||||||| || ||  |||| |||||| ||||||||||||    
T  43625314 tcaatcactcgtgccaaatttgatgaaataaatatggatcttttcaacgagtgtttgaaaactgttaagagttgtctta 43625236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 337
Target Start/End: Original strand, 16662214 - 16662332
Alignment:
Q  219 ctattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcat 318  Q
    |||||||||| |||| |||||  || | |||||| || ||| | ||| ||| ||||| ||||||||| ||||| |||||||  ||||| || || || ||    
T  16662214 ctattgagattgattatttatacgaggacattgacttctctacatcactcactcgtgtcaagtttgaagaaatcaatatgggcctttttaacgagtgtat 16662313  T
Q  319 gaagactgttgagagttgt 337  Q
    ||||| |||||||||||||    
T  16662314 gaagattgttgagagttgt 16662332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 130
Target Start/End: Original strand, 17717979 - 17718080
Alignment:
Q  29 ctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagttactttgtagaagagttaaagagaaagaac 128  Q
    |||||| ||||| |||||||| ||| || | || |||||| | ||||| ||| |||| ||||||||||   |||||||  ||||||| ||||||||||||    
T  17717979 ctttcaggttaaagctacagccggagacgcccatcttggaggtgaggattttaataacagaatggtgaaccactttgttcaagagttcaagagaaagaac 17718078  T
Q  129 aa 130  Q
    ||    
T  17718079 aa 17718080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 100; Significance: 2e-49; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 15 - 363
Target Start/End: Complemental strand, 35132602 - 35132259
Alignment:
Q  15 attaaggataatgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagttactttgtagaagagt 114  Q
    ||||||||||||||||| ||||||||||| || || |||||||| || || ||  |||||||||||||||| ||||||||||  ||||||||| ||||||    
T  35132602 attaaggataatgtcttccaagttaaggccactgccggaaacactcatctcggtggagaggactttgataacagaatggtgaactactttgtacaagagt 35132503  T
Q  115 taaagagaaagaacaaagtagatataagtggaaatccaagagctttgaggagattgaaaacagtgagagtgcaaaaagatcactttcttatcttgttgtt 214  Q
    | |||||||||||||||||||| || ||||| ||| ||| ||| |||||   | ||    | |  |||| ||||| |||||||||||||  |||||||||    
T  35132502 tcaagagaaagaacaaagtagacattagtgggaattcaaaagccttgag--aactg---cctgctagagggcaaagagatcactttctttccttgttgtt 35132408  T
Q  215 gcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaat 314  Q
    || | ||||||  |||||||||||| | | ||||||||||||||| | ||||||||||| ||||||||||||||||| |||   || ||||| ||||| |    
T  35132407 gccaatattgaagtagattctttatttcaaggcattgatttttcttcatcaatcaatcgcgccaagtttgaggaaatgaatgcagacctttttaatgagt 35132308  T
Q  315 gcatgaagactgttgagagttgtcttaccgatgctaacacggacaagag 363  Q
    | ||||| || || ||||||||||| |  |||||||| | |||||||||    
T  35132307 gtatgaataccgtagagagttgtctcattgatgctaagatggacaagag 35132259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 222 - 342
Target Start/End: Complemental strand, 30775195 - 30775075
Alignment:
Q  222 ttgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaa 321  Q
    |||||||||||  ||||| | | | |||||| |||||| | ||||||| ||||| ||||||||||||||| |||||||| ||||| ||||| || ||  |    
T  30775195 ttgagatagataatttatttcaagacattgacttttcttcatcaatcactcgtgtcaagtttgaggaaatcaatatggacctttttaatgagtgtataca 30775096  T
Q  322 gactgttgagagttgtcttac 342  Q
    |||||||||||||||||||||    
T  30775095 gactgttgagagttgtcttac 30775075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 30775420 - 30775258
Alignment:
Q  1 tgtctctactaaccattaaggataatgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagtta 100  Q
    ||||||| || |||||||  ||| |||| ||| ||||||| || || ||||||||||| ||| | ||  |||||||||||||||| |||||| ||| |||    
T  30775420 tgtctcttctcaccattagagatgatgtgtttgaagttaaagcaactgctggaaacactcacatcgggggagaggactttgataacagaatgttgaatta 30775321  T
Q  101 ctttgtagaagagttaaagagaaagaacaaagtagatataagtggaaatccaagagctttgag 163  Q
    ||||||||| || || ||||  |||||||| || || || |  || |||||||||||||||||    
T  30775320 ctttgtagaggaatttaagacgaagaacaacgtggacattaccgggaatccaagagctttgag 30775258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 9335941 - 9336008
Alignment:
Q  51 ggaaacacgcaccttggaagagaggactttgataatagaatggtgagttactttgtagaagagttaaa 118  Q
    |||||||||||||||||| | |||||||||||||| |||||||| |  || ||||| |||||||||||    
T  9335941 ggaaacacgcaccttggaggcgaggactttgataacagaatggttaactattttgtggaagagttaaa 9336008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 5e-38; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 18 - 363
Target Start/End: Complemental strand, 28220069 - 28219720
Alignment:
Q  18 aaggataatgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagttactttgtagaagagttaa 117  Q
    |||||||| ||||| ||||| ||||| || ||||||||||| ||||| ||  ||||||||||||||| ||| |||||||  ||||| | ||| ||||| |    
T  28220069 aaggataaggtcttccaagtgaaggccaccgctggaaacactcacctcgggggagaggactttgatagtaggatggtgaactacttcgcagaggagttta 28219970  T
Q  118 agagaaagaacaaagtagatataagtggaaatccaagagctttgaggagattgaaaacagtg----agagtgcaaaaagatcactttcttatcttgttgt 213  Q
    |||  |||||||| || || || | ||||||  ||||||| || ||||| |||| ||||| |    |||| ||||||||  |||| |||| |  ||||||    
T  28219969 agaagaagaacaaggtggacattactggaaactcaagagccttaaggaggttgagaacagcgtgcaagagagcaaaaaggacactatcttttgctgttgt 28219870  T
Q  214 tgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaa 313  Q
     || || |||||| |||||||||||| ||| ||||||||||| | | | ||||| | |||||| |||||||||||||| |||||||| |||||||||||     
T  28219869 cgccaccattgaggtagattctttatttgaaggcattgatttcttttcatcaattactcgtgctaagtttgaggaaatcaatatggatcttttcaatgag 28219770  T
Q  314 tgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagag 363  Q
    ||  |||| ||||||||||| ||||| || ||||| || | |||||||||    
T  28219769 tgtttgaaaactgttgagaggtgtctcactgatgccaatatggacaagag 28219720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 365
Target Start/End: Original strand, 27830889 - 27831243
Alignment:
Q  15 attaaggataatgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagttactttgtagaagagt 114  Q
    ||||||||||| ||||| ||||||||||| || ||||||||||| ||||||||  ||||||||||||||||||| |||||||  || ||||| || | ||    
T  27830889 attaaggataaggtcttccaagttaaggcaactgctggaaacactcaccttggtggagaggactttgataataggatggtgaactattttgtggaggtgt 27830988  T
Q  115 taaagagaaagaacaaagtagatataagtggaaatccaagagctttgaggagattgaaaac----agtgagagtgcaaaaagatcactttcttatcttgt 210  Q
    | ||||  ||||| | ||| || || ||||| || |||||||| ||||||||  ||| |||     ||||||  ||||||||  |||| |||| |  |||    
T  27830989 tcaagaagaagaaaagagtggacattagtgggaacccaagagccttgaggaggctgagaacctaatgtgagaaggcaaaaaggacactctctttttctgt 27831088  T
Q  211 tgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaat 310  Q
    ||   | ||||||||||||||| | |||| ||| |||||||| || | | |    |||| |||||| |||||||||||||| |||||||| |||||||||    
T  27831089 tgacactactattgagatagatgccttatttgagggcattgacttcttttcaatgatcactcgtgcaaagtttgaggaaatcaatatggaccttttcaat 27831188  T
Q  311 gaatgcatgaagactgttgagagttgtcttaccgatgctaacacggacaagagta 365  Q
    ||||| ||| ||||||||||||||||||| || ||  |||| | |||||||||||    
T  27831189 gaatgtatggagactgttgagagttgtctcactgactctaagatggacaagagta 27831243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 3147432 - 3147092
Alignment:
Q  1 tgtctctactaaccattaaggataatgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagtta 100  Q
    ||||||| || || ||||||||||| ||||||||||||||||| |  || |||||||| ||||||||  ||||||||||||||||||| |||||||  ||    
T  3147432 tgtctcttcttacaattaaggataaggtctttcaagttaaggccatcgcaggaaacacccaccttgggggagaggactttgataataggatggtgaacta 3147333  T
Q  101 ctttgtagaagagttaaagagaaagaacaaagtagatataagtggaaatccaagagctttgaggagattgaaaac----agtgagagtgcaaaaagatca 196  Q
    ||||| |   ||||| ||||  |||||||| ||||| || ||||  ||  ||||||| || ||||| ||||||||     |||| || |||||| ||  |    
T  3147332 ctttgcacgggagtttaagaagaagaacaaggtagacattagtgagaactcaagagccttaaggaggttgaaaacggcgtgtgaaagagcaaaacgaata 3147233  T
Q  197 ctttcttatcttgttgttgcaactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaata 296  Q
    || |||| |  |||  |  | || ||||||||||||||||||| | | ||  |||| || | | | ||||||| ||||||||||||||||||||| ||||    
T  3147232 ctatcttttgctgtcatcaccaccattgagatagattctttatttcagggatttgacttattttcatcaatcactcgtgccaagtttgaggaaatcaata 3147133  T
Q  297 tggaacttttcaatgaatgcatgaagactgttgagagttgt 337  Q
    |||| ||||||| ||| ||  || | |||||| ||||||||    
T  3147132 tggatcttttcactgagtgtttggaaactgttaagagttgt 3147092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 351
Target Start/End: Original strand, 8585730 - 8586060
Alignment:
Q  25 atgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagttactttgtagaagagttaaagagaaa 124  Q
    |||||||| ||||||| || || |||||||| || ||||||||  ||| |||||||||||| |||||| |||  |||||||| || || || ||||||||    
T  8585730 atgtctttgaagttaaagcaaccgctggaaatactcaccttgggggaggggactttgataacagaatgttgaactactttgttgaggaatttaagagaaa 8585829  T
Q  125 gaacaaagtagatataagtggaaatccaagagctttgaggagattgaaaacag----tgagagtgcaaaaagatcactttcttatcttgttgttg-caac 219  Q
    |||||| || ||||| | |   || ||||||||||||||| | || | ||| |    ||| |  ||||||||  ||||||||| ||   ||| |  | ||    
T  8585830 gaacaatgtggatattactaagaacccaagagctttgaggcggttaagaacggcatgtgaaaaggcaaaaaggacactttctt-tcaaattggtcactac 8585928  T
Q  220 tattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatg 319  Q
    |||||| || |||| ||||||||| ||| | ||||| ||| | |||||||  |||| ||||||||||||||| |||||||| ||||| ||||| || ||     
T  8585929 tattgaaattgattatttatgtgagggcgtcgatttctcttcatcaatcacgcgtgtcaagtttgaggaaatcaatatggacctttttaatgagtgtata 8586028  T
Q  320 aagactgttgagagttgtcttaccgatgctaa 351  Q
    || |||||||||||||||||||||||| ||||    
T  8586029 aatactgttgagagttgtcttaccgattctaa 8586060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 218 - 337
Target Start/End: Complemental strand, 8616628 - 8616509
Alignment:
Q  218 actattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgca 317  Q
    ||||||||||| |||| ||||||||| ||||| ||||| ||| | ||||||| |||||  |||||||||||||| |||||||| ||||| || || || |    
T  8616628 actattgagattgattatttatgtgagggcatcgatttctcttcatcaatcactcgtgttaagtttgaggaaatcaatatggacctttttaacgagtgta 8616529  T
Q  318 tgaagactgttgagagttgt 337  Q
    | ||||||||||||||||||    
T  8616528 taaagactgttgagagttgt 8616509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 249 - 351
Target Start/End: Complemental strand, 17267855 - 17267753
Alignment:
Q  249 ttgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgatgc 348  Q
    ||||||||||| ||||||||| ||||||||||||||||||||| |||||||| |||||  |||| |||||| ||| ||||||||  |||||||  |||||    
T  17267855 ttgatttttcttcgtcaatcactcgtgccaagtttgaggaaatcaatatggacctttttgatgagtgcatggagattgttgagaagtgtcttagtgatgc 17267756  T
Q  349 taa 351  Q
    |||    
T  17267755 taa 17267753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 49 - 346
Target Start/End: Complemental strand, 8659483 - 8659182
Alignment:
Q  49 ctggaaacacgcaccttggaagagaggactttgataatagaatggtgagttactttgtagaagagttaaagagaaagaacaaagtagatataagtggaaa 148  Q
    |||||||||| ||||||||| |||||||||||||||  ||||||||||  ||||||||||| ||||| || |  ||||| ||||| || || ||||| ||    
T  8659483 ctggaaacactcaccttggaggagaggactttgatagcagaatggtgaactactttgtagaggagttcaaaaagaagaataaagtggacattagtggtaa 8659384  T
Q  149 tccaagagctttgaggagattgaaaacag----tgagagtgcaaaaagatcactttcttatcttgttgttgcaactattgagatagattctttatgtgat 244  Q
     |||| | | || ||||| |||| ||| |    |||||| ||||| ||  |||| |||| |  | ||||  | ||| ||||| | |||||||||| | |     
T  8659383 cccaaaatccttaaggaggttgagaactgcctgtgagagggcaaagaggacactctcttttgcttttgtcaccactgttgaggtcgattctttatttcag 8659284  T
Q  245 ggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccg 344  Q
    || || || || | | | | ||||| |||||||| |||||||||||| |||||||| ||||| ||||| || ||||| ||||||||||||||||||| ||    
T  8659283 ggaatagacttctgttcattaatcactcgtgccaggtttgaggaaatgaatatggatctttttaatgagtgtatgaaaactgttgagagttgtcttagcg 8659184  T
Q  345 at 346  Q
    ||    
T  8659183 at 8659182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 1301604 - 1301514
Alignment:
Q  25 atgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagttactttgtagaagagtt 115  Q
    |||||||| |||| || || || | |||||| || ||||||||| |||||||||||||||||||||||||||| ||||||||||| |||||    
T  1301604 atgtctttgaagtaaaagccactggtggaaatactcaccttggaggagaggactttgataatagaatggtgagctactttgtagaggagtt 1301514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 95
Target Start/End: Complemental strand, 8647045 - 8646951
Alignment:
Q  1 tgtctctactaaccattaaggataatgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtg 95  Q
    ||||||| || || ||||||||||| |||||||| ||||| || || ||||||||||| ||||| ||| ||||||||||||||| ||||||||||    
T  8647045 tgtctctccttacaattaaggataaggtctttcatgttaaagccaccgctggaaacactcacctcggaggagaggactttgatagtagaatggtg 8646951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 370
Target Start/End: Complemental strand, 6789660 - 6789307
Alignment:
Q  21 gataatgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagttactttgtagaagagttaaaga 120  Q
    ||||| ||||| ||||||||||| || | ||||||||| ||||| ||| ||||||||||||||||  || |||| |  ||||||| ||| ||||| ||||    
T  6789660 gataaggtcttccaagttaaggccaccggtggaaacactcacctcggaggagaggactttgataaccgattggtaaactactttgcagaggagtttaaga 6789561  T
Q  121 gaaagaacaaagtagatataagtggaaatccaagagctttgaggagattgaaaac----agtgagagtgcaaaaagatcactttcttatcttgttgttgc 216  Q
    | ||||||||||| ||||| | ||||||  |||| || || || || |||| |||     |||| || || |||||   ||| |||| | |||| ||  |    
T  6789560 ggaagaacaaagtggatattactggaaactcaagggccttaagaaggttgagaactgcgtgtgaaagggccaaaagggtactctcttttgttgtcgtcac 6789461  T
Q  217 aactattgagatagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgc 316  Q
     ||||||||| |||| ||||||| | | ||||| || ||   | | ||| | | ||| ||||||||||||||||| ||||||||  |||| ||||| ||     
T  6789460 tactattgaggtagactctttatttcagggcatcgacttcatttcatcacttactcgggccaagtttgaggaaatcaatatggatatttttaatgagtgt 6789361  T
Q  317 atgaagactgttgagagttgtcttaccgatgctaacacggacaagagtaatgta 370  Q
    |||||||| |||||||||||||||   || ||||| | ||||||||||| ||||    
T  6789360 atgaagaccgttgagagttgtcttgttgacgctaagatggacaagagtattgta 6789307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 252 - 341
Target Start/End: Complemental strand, 17260154 - 17260065
Alignment:
Q  252 atttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtctta 341  Q
    |||||||| ||||||||| ||||||||||||||| ||||| |||||||| |||||  |||| |||||| ||| ||||||||  |||||||    
T  17260154 atttttcttcgtcaatcactcgtgccaagtttgaagaaatcaatatggaccttttttatgagtgcatggagattgttgagaagtgtctta 17260065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 346
Target Start/End: Complemental strand, 1301360 - 1301279
Alignment:
Q  265 aatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccgat 346  Q
    ||||| ||||||||||||||||||||| |||||||| ||||| ||||| || |  || || |||||||||||||||| ||||    
T  1301360 aatcactcgtgccaagtttgaggaaattaatatggatctttttaatgagtgtacaaaaaccgttgagagttgtcttagcgat 1301279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 15 - 131
Target Start/End: Complemental strand, 8559487 - 8559371
Alignment:
Q  15 attaaggataatgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagttactttgtagaagagt 114  Q
    |||||| ||||| ||||| |||| ||||| ||  | ||| |||| ||||| ||| |||||||||||||||| ||||||||||   |||||||| ||||||    
T  8559487 attaagaataatctctttgaagtcaaggccacttccggagacacacacctcggaggagaggactttgataacagaatggtgaaacactttgtaaaagagt 8559388  T
Q  115 taaagagaaagaacaaa 131  Q
    |  |||| |||||||||    
T  8559387 ttgagaggaagaacaaa 8559371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 8654618 - 8654504
Alignment:
Q  1 tgtctctactaaccattaaggataatgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagtta 100  Q
    ||||| |||| || ||||||| | |||||||| | || || || || ||||||||||||||||| ||  |||| ||||||||||| |||||||||   ||    
T  8654618 tgtctatactcacaattaagggtgatgtctttgacgtaaaagccactgctggaaacacgcacctagggggagaagactttgataacagaatggtgtacta 8654519  T
Q  101 ctttgtagaagagtt 115  Q
    ||||||||| |||||    
T  8654518 ctttgtagaggagtt 8654504  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 27 - 136
Target Start/End: Original strand, 8636369 - 8636478
Alignment:
Q  27 gtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagttactttgtagaagagttaaagagaaaga 126  Q
    |||||| ||||||| || || || ||| |||| ||||||||| |||||||||||||||| |||||||||   || |||||||| ||  | ||||| ||||    
T  8636369 gtctttgaagttaaagccactgccggagacacacaccttggaggagaggactttgataacagaatggtggaatattttgtagaggaaatcaagaggaaga 8636468  T
Q  127 acaaagtaga 136  Q
    |||| |||||    
T  8636469 acaaggtaga 8636478  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 364
Target Start/End: Complemental strand, 8646814 - 8646678
Alignment:
Q  228 tagattctttatgtgatggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgt 327  Q
    |||||||||||| | |||||||||| |||  | | ||||||| ||||||||| ||||| | ||| |||||||| || ||||  |||||  || | |||||    
T  8646814 tagattctttatttaatggcattgactttatttcatcaatcactcgtgccaaatttgacgcaatcaatatggatctgttcatcgaatgtttggaaactgt 8646715  T
Q  328 tgagagttgtcttaccgatgctaacacggacaagagt 364  Q
    ||||||||||| ||  ||||| || | ||||||||||    
T  8646714 tgagagttgtcataatgatgccaagatggacaagagt 8646678  T

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Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 95
Target Start/End: Complemental strand, 17260395 - 17260315
Alignment:
Q  15 attaaggataatgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtg 95  Q
    ||||||||||| |||||  |||||||||| || | |||| |||| || |||||  | ||||||||||||||||||||||||    
T  17260395 attaaggataaggtcttcgaagttaaggccaccggtggagacactcatcttgggggtgaggactttgataatagaatggtg 17260315  T

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Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 92
Target Start/End: Complemental strand, 8628676 - 8628609
Alignment:
Q  25 atgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatg 92  Q
    |||||||| ||||||| || || |||||||| || ||||||||  |||||||||||||||| ||||||    
T  8628676 atgtctttgaagttaaagccactgctggaaatactcaccttggtggagaggactttgataacagaatg 8628609  T

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Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 15 - 94
Target Start/End: Complemental strand, 17268093 - 17268014
Alignment:
Q  15 attaaggataatgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggt 94  Q
    ||||||||||| |||||  |||||||||| || | |||| |||| || |||||  | |||||||||||||||||||||||    
T  17268093 attaaggataaggtcttcgaagttaaggccaccggtggagacactcatcttgggggtgaggactttgataatagaatggt 17268014  T

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Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 8602128 - 8602047
Alignment:
Q  15 attaaggataatgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtga 96  Q
    |||||| ||||| ||||| |||| ||||| ||  | ||| |||| ||||||||| ||||||||||||||||  |||||||||    
T  8602128 attaagaataatctctttgaagtcaaggccacttccggagacacacaccttggaggagaggactttgataaccgaatggtga 8602047  T

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Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 339
Target Start/End: Complemental strand, 8654361 - 8654276
Alignment:
Q  254 ttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtct 339  Q
    |||||| | ||||||| |||||| || ||||||||||| ||||||||  |||||||||| || || || | |||||| ||||||||    
T  8654361 ttttcttcatcaatcactcgtgctaaatttgaggaaattaatatggactttttcaatgagtgtatcaatattgttgacagttgtct 8654276  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 49 - 363
Target Start/End: Complemental strand, 43744936 - 43744618
Alignment:
Q  49 ctggaaacacgcaccttggaagagaggactttgataatagaatggtgagttactttgtagaagagttaaagagaaagaacaaagtagatataagtggaaa 148  Q
    |||||||||| ||||| ||| ||||||| ||||||||||| |||||||  ||||| | ||| ||||| ||||  |||||||| || || || | ||||||    
T  43744936 ctggaaacactcacctcggaggagaggattttgataataggatggtgaactacttcgcagaggagtttaagaagaagaacaaggtggacattactggaaa 43744837  T
Q  149 tccaagagctttgaggagattgaaaacagt----gagagtgcaaaaagatcactttcttatcttgttgttgcaactattgagatagattctttatgtgat 244  Q
     |||||||| || ||||| |||| |||||     || || ||||||||  || | |||| |  ||||||  | ||||||||| |||||||||||| |||     
T  43744836 cccaagagcattaaggaggttgagaacagcatgcgaaagagcaaaaaggacattatcttttgctgttgtcaccactattgaggtagattctttatttgag 43744737  T
Q  245 ggcattgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtcttaccg 344  Q
    ||||||||||| | | |  |||||| |||| | |||||||||||||| |||||||| || ||||| || ||  |||| | |||||||||||||||||| |    
T  43744736 ggcattgatttctttacaacaatcactcgtactaagtttgaggaaatcaatatggatctcttcaacgagtgtttgaaaattgttgagagttgtcttactg 43744637  T
Q  345 atgctaacacggacaagag 363  Q
    |||| || | |||||||||    
T  43744636 atgccaagatggacaagag 43744618  T

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Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 22 - 133
Target Start/End: Complemental strand, 12528651 - 12528540
Alignment:
Q  22 ataatgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagttactttgtagaagagttaaagag 121  Q
    ||||||||||  |||| ||||| || || ||| |||| ||||||||| ||||||||||||||||| ||||||||| | |||||||  ||||||| |||||    
T  12528651 ataatgtcttcgaagtcaaggccactgccggagacactcaccttggaggagaggactttgataatcgaatggtgaatcactttgtgaaagagtttaagag 12528552  T
Q  122 aaagaacaaagt 133  Q
     |||||||||||    
T  12528551 gaagaacaaagt 12528540  T

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Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 9 - 171
Target Start/End: Complemental strand, 15595194 - 15595032
Alignment:
Q  9 ctaaccattaaggataatgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagttactttgtag 108  Q
    ||||| |||||||| || ||||| ||||||||||| ||||  |||||||| ||||||||| |||||||||||||||| |||||||| |  |||||||       
T  15595194 ctaacaattaaggacaaggtcttccaagttaaggccacaggcggaaacactcaccttggaggagaggactttgataacagaatggtcaactactttgcgc 15595095  T
Q  109 aagagttaaagagaaagaacaaagtagatataagtggaaatccaagagctttgaggagattga 171  Q
    | || || ||||  ||||||||||| ||||| | ||| || ||||| || |||||||||||||    
T  15595094 aggaattcaagacgaagaacaaagtggatattactgggaacccaagggccttgaggagattga 15595032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 34466793 - 34466963
Alignment:
Q  1 tgtctctactaaccattaaggataatgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagtta 100  Q
    ||||||| || || |||||||||||||||||| |||||||||| ||  |||| ||||| ||||| ||| |||||||||||||||||||||||| ||   |    
T  34466793 tgtctctccttacaattaaggataatgtctttgaagttaaggccacttctggtaacactcacctcggacgagaggactttgataatagaatggcgaacca 34466892  T
Q  101 ctttgtagaagagttaaagagaaagaacaaagtagatataagtggaaatccaagagctttgaggagattga 171  Q
    ||||| | | ||||| ||||| ||| | ||    ||||| |||||||| || |||||||||||||| ||||    
T  34466893 ctttgcaaaggagttcaagaggaagcataataaggatattagtggaaaccctagagctttgaggaggttga 34466963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 271 - 341
Target Start/End: Original strand, 4678831 - 4678901
Alignment:
Q  271 tcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtctta 341  Q
    ||||||||||||||||||||| |||||||| |||||||| || || ||| | |||||| ||||||||||||    
T  4678831 tcgtgccaagtttgaggaaattaatatggaccttttcaacgagtgtatggaaactgttaagagttgtctta 4678901  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 4678583 - 4678672
Alignment:
Q  26 tgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtgagttactttgtagaagagtt 115  Q
    ||||||| |||| || || || ||||||||||| ||||| ||  |||||||||||||||| ||||||||||  ||||||||||| |||||    
T  4678583 tgtctttgaagtaaaagccactgctggaaacactcacctaggtggagaggactttgataacagaatggtgaactactttgtagaggagtt 4678672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 249 - 338
Target Start/End: Original strand, 52549264 - 52549353
Alignment:
Q  249 ttgatttttctgcgtcaatcaatcgtgccaagtttgaggaaataaatatggaacttttcaatgaatgcatgaagactgttgagagttgtc 338  Q
    ||||||||||| | || |||||| | ||||||||||||||||| |||||||| ||||| || || || ||||||| |||||| |||||||    
T  52549264 ttgatttttcttcatcgatcaatagggccaagtttgaggaaatgaatatggacctttttaaggagtgtatgaagattgttgaaagttgtc 52549353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 261 - 300
Target Start/End: Original strand, 34467049 - 34467088
Alignment:
Q  261 cgtcaatcaatcgtgccaagtttgaggaaataaatatgga 300  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  34467049 cgtcaatcactcgtgccaagtttgaggaaatcaatatgga 34467088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 28910732 - 28910655
Alignment:
Q  19 aggataatgtctttcaagttaaggctacagctggaaacacgcaccttggaagagaggactttgataatagaatggtga 96  Q
    ||||||| ||||| ||||||||||| || ||||||||||| ||||| ||    |||||| |||||||||| |||||||    
T  28910732 aggataaggtcttccaagttaaggccaccgctggaaacactcacctcggggtcgaggacattgataataggatggtga 28910655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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