View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11575_high_28 (Length: 378)
Name: NF11575_high_28
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_high_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 47422597 - 47422250
Alignment:
| Q |
18 |
tttttgattctagattgttagaaggattactagggttttgtgggtgcaattgtgtagaagaagaagaagaatatcccgtggctagatatttgttcaagaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
47422597 |
tttttgattctagattgttagaaggattattagggttttgtgggtgcaattgtgtagaagaagaagaagaatatcctgtggctagatatttgttcaagaa |
47422498 |
T |
|
| Q |
118 |
ttcaatgatgttggcttgtctatcacttgcaatagcttgttgttcttgtaccatcatgttcatcctttcaatctcttgttttttccatgtttcctctcta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47422497 |
ttcaatgatgttggcttgtctatcacttgcaatagcttgttgttcttgtaccatcatgttcatcctttcaatctcttgttttttccatgtttcctctcta |
47422398 |
T |
|
| Q |
218 |
tcaagcttttcttgatctcttttgagcatgtcttcaagtagcttattgtgtatttcttcttgttgtgctattattttgttaaccactgtctcacaaaaac |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
47422397 |
tcaagcttttcttgatctcttttgagcatgtcttcaagtagcttattgtgtatttcttcttgttgtgctattattttattaaccactgtctcacaaaaac |
47422298 |
T |
|
| Q |
318 |
tcttcaacatttcaaatctatcacggcgcctcttcctctttttgttct |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47422297 |
tcttcaacatttcaaatctatcacggcgcctcttcctctttttgttct |
47422250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 340
Target Start/End: Original strand, 36127974 - 36128126
Alignment:
| Q |
188 |
atctcttgttttttccatgtttcctctctatcaagcttttcttgatctcttttgagcatgtcttcaagtagcttattgtgtatttcttcttgttgtgcta |
287 |
Q |
| |
|
||||||||||| ||||| | ||| |||||| || ||| |||| ||||||||| | ||| ||||||| ||||| ||||| |||||||||||||| | | |
|
|
| T |
36127974 |
atctcttgtttcttccaagcttcttctctactaaacttctcttcatctcttttaaccatatcttcaataagcttgttgtgcatttcttcttgttgatcca |
36128073 |
T |
|
| Q |
288 |
ttattttgttaaccactgtctcacaaaaactcttcaacatttcaaatctatca |
340 |
Q |
| |
|
| ||||| || || || |||||||||||| ||| |||| ||||||||||||| |
|
|
| T |
36128074 |
tcattttctttacaacactctcacaaaaacccttaaacacttcaaatctatca |
36128126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University