View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_high_29 (Length: 377)
Name: NF11575_high_29
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_high_29 |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 16 - 361
Target Start/End: Complemental strand, 12221699 - 12221352
Alignment:
| Q |
16 |
attcagtgtactgtctaggaaaatggcaccatggtatggtagaccttgtgccaacatccatgggccgcaacacttgtacaaatatagatgttgtataatg |
115 |
Q |
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| T |
12221699 |
attcagtgtactgtctaggaaaatggcaccatggtatggtagaccttgtgccaacatccataggccgcaacacttgtacaaatatagatgttgtataatg |
12221600 |
T |
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| Q |
116 |
tcgaaattgttagattggacactt-cactctggttcgg-acccgatacctcccagatttgtgagtttcaacatgcttaccacttcgcctatggaccaaat |
213 |
Q |
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| T |
12221599 |
tcgaaattgttaggttgaacactttcactctggttcgggacccgatacctcccagatttgtgagtttcaacatgcttaccacttcgtctatggaccaaat |
12221500 |
T |
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| Q |
214 |
aaaataaaagttgacactctacccaaagcatgatttattgagttatattgtaaactttcttctaattgattgcaagcaagtgttttattctgaaatggtg |
313 |
Q |
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| T |
12221499 |
aaaataaaagttgacactctacccaaaacatgatttattgatttatattgtaaactttcttctaattgattgcaagcaagtgttttattctgaaatggtg |
12221400 |
T |
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| Q |
314 |
aaatacttcccaaatatgggttaggataaatacgaattggcaccaagc |
361 |
Q |
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|||||||| |||||||||| ||||||||||||||||| |||||||||| |
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| T |
12221399 |
aaatactttccaaatatggcttaggataaatacgaatcggcaccaagc |
12221352 |
T |
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