View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11575_high_31 (Length: 346)

Name: NF11575_high_31
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11575_high_31
NF11575_high_31
[»] chr4 (14 HSPs)
chr4 (17-327)||(41074803-41075119)
chr4 (103-196)||(14320962-14321055)
chr4 (103-196)||(14322132-14322225)
chr4 (110-196)||(14321708-14321794)
chr4 (110-196)||(14320540-14320626)
chr4 (198-248)||(46020667-46020717)
chr4 (198-241)||(46015435-46015478)
chr4 (206-248)||(46021346-46021388)
chr4 (205-243)||(46304201-46304239)
chr4 (198-243)||(46246221-46246266)
chr4 (207-248)||(46303770-46303811)
chr4 (198-242)||(46015982-46016026)
chr4 (141-201)||(46027955-46028014)
chr4 (141-201)||(46428272-46428332)
[»] scaffold0384 (4 HSPs)
scaffold0384 (103-201)||(5609-5708)
scaffold0384 (23-143)||(4509-4629)
scaffold0384 (201-248)||(4145-4192)
scaffold0384 (159-201)||(4206-4248)
[»] chr1 (9 HSPs)
chr1 (21-248)||(50668383-50668626)
chr1 (73-201)||(50667974-50668102)
chr1 (196-245)||(3802615-3802664)
chr1 (138-196)||(3801754-3801812)
chr1 (127-201)||(50667366-50667440)
chr1 (205-246)||(3804059-3804100)
chr1 (203-248)||(50668119-50668164)
chr1 (196-248)||(3802173-3802225)
chr1 (204-248)||(50669344-50669388)
[»] scaffold0079 (5 HSPs)
scaffold0079 (23-143)||(7027-7147)
scaffold0079 (201-248)||(6706-6753)
scaffold0079 (115-167)||(7857-7909)
scaffold0079 (266-327)||(6559-6625)
scaffold0079 (159-201)||(6767-6809)
[»] chr5 (1 HSPs)
chr5 (41-136)||(8185984-8186079)
[»] chr8 (3 HSPs)
chr8 (213-244)||(4525277-4525308)
chr8 (198-244)||(4522904-4522950)
chr8 (157-195)||(39328272-39328310)
[»] chr7 (1 HSPs)
chr7 (41-136)||(715259-715350)


Alignment Details
Target: chr4 (Bit Score: 245; Significance: 1e-136; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 327
Target Start/End: Original strand, 41074803 - 41075119
Alignment:
Q  17 agatagcatagaggaaaattctcatgtgacaaccaacccgtttcttgatgagatgcaagaagtagaaagtaagttttactcaacactgtattaatatatt 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41074803 agatagcatagaggaaaattctcatgtgacaaccaacccgtttcttgatgagatgcaagaagtagaaagtaagttttactcaacactgtattaatatatt 41074902  T
Q  117 ctttgcggttgaattaatttacatttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaattattttgtgaaaatgctagct 216  Q
    ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  41074903 ctttgtggttgaattaatttgcatctcgtccatttgttatgatttagattttgacggtaaaaccatgggaagatgcaattattttgtgaaaatgctagct 41075002  T
Q  217 cttgattgagtgttaatatgcacataagttggnnnnnnnggctgttatatttgtcttctattatgtttttgccttgtccttttc------aactttcagc 310  Q
    |||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||| |||||      ||||||||||    
T  41075003 cttgattgagtgttaatatgcacataagttgatttttttggctgttatatttgtcttctattatgtttttgccttgtctttttcttttttaactttcagc 41075102  T
Q  311 catattgaaatatcctc 327  Q
    |||||||||||||||||    
T  41075103 catattgaaatatcctc 41075119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 14320962 - 14321055
Alignment:
Q  103 tgtattaatatattctttgcggttgaattaatttacatttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaatt 196  Q
    ||||||||||| |||||| | |||||||||||||||| ||| |||||||||| ||||||||||||||||   ||||||||| ||||||||||||    
T  14320962 tgtattaatatgttctttacagttgaattaatttacacttcatccatttgttgtgatttagattttgacataagaaccatgtgaagatacaatt 14321055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 103 - 196
Target Start/End: Original strand, 14322132 - 14322225
Alignment:
Q  103 tgtattaatatattctttgcggttgaattaatttacatttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaatt 196  Q
    ||||||||||| |||||| | ||||||||||||| || ||| |||||||||| ||||||||||||||||   ||||||||| ||||||||||||    
T  14322132 tgtattaatatgttctttacagttgaattaatttgcacttcatccatttgttgtgatttagattttgacataagaaccatgtgaagatacaatt 14322225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 14321708 - 14321794
Alignment:
Q  110 atatattctttgcggttgaattaatttacatttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaatt 196  Q
    |||| |||||||  ||||||||||| | || ||| ||||||||| ||||||||||| || || ||||||||||||||||||||||||    
T  14321708 atatgttctttggagttgaattaatctgcacttcatccatttgtcatgatttagatattaactgtagaaccatgggaagatacaatt 14321794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 14320540 - 14320626
Alignment:
Q  110 atatattctttgcggttgaattaatttacatttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaatt 196  Q
    |||| |||||||  ||||||||||| | || ||| ||||||||| ||||||||||| || || ||||||||||| ||||||||||||    
T  14320540 atatgttctttggagttgaattaatctgcacttcatccatttgtcatgatttagatattaactgtagaaccatgtgaagatacaatt 14320626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 46020667 - 46020717
Alignment:
Q  198 ttttgtgaaaatgctagctcttgattgagtgttaatatgcacataagttgg 248  Q
    |||| ||||||||| | ||||||||||||||||||||||||||||| ||||    
T  46020667 ttttatgaaaatgcaacctcttgattgagtgttaatatgcacataatttgg 46020717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 46015435 - 46015478
Alignment:
Q  198 ttttgtgaaaatgctagctcttgattgagtgttaatatgcacat 241  Q
    |||| ||||||||| | |||||||||||||||||||||||||||    
T  46015435 ttttatgaaaatgcaacctcttgattgagtgttaatatgcacat 46015478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 206 - 248
Target Start/End: Original strand, 46021346 - 46021388
Alignment:
Q  206 aaatgctagctcttgattgagtgttaatatgcacataagttgg 248  Q
    |||||| | ||||||||||| ||||||||||||||||||||||    
T  46021346 aaatgcaacctcttgattgaatgttaatatgcacataagttgg 46021388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 205 - 243
Target Start/End: Complemental strand, 46304239 - 46304201
Alignment:
Q  205 aaaatgctagctcttgattgagtgttaatatgcacataa 243  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  46304239 aaaatgcaagctcttgtttgagtgttaatatgcacataa 46304201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 46246266 - 46246221
Alignment:
Q  198 ttttgtgaaaatgctagctcttgattgagtgttaatatgcacataa 243  Q
    |||| ||||||||| | ||||||||||| |||||||||||||||||    
T  46246266 ttttatgaaaatgcaacctcttgattgaatgttaatatgcacataa 46246221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 248
Target Start/End: Complemental strand, 46303811 - 46303770
Alignment:
Q  207 aatgctagctcttgattgagtgttaatatgcacataagttgg 248  Q
    ||||| |||||||||||  |||||||||||||||||||||||    
T  46303811 aatgcaagctcttgattttgtgttaatatgcacataagttgg 46303770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 46015982 - 46016026
Alignment:
Q  198 ttttgtgaaaatgctagctcttgattgagtgttaatatgcacata 242  Q
    |||| ||||||||| || |||||||||||||||||||| ||||||    
T  46015982 ttttatgaaaatgcaagttcttgattgagtgttaatatacacata 46016026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 46027955 - 46028014
Alignment:
Q  141 ttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaattatttt 201  Q
    ||||||||| |||||||||||| ||||||||  || ||| ||| |||||||||||||||||    
T  46027955 ttcgtccatctgttatgatttaaattttgacttta-aactatgtgaagatacaattatttt 46028014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 201
Target Start/End: Original strand, 46428272 - 46428332
Alignment:
Q  141 ttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaattatttt 201  Q
    ||||||||  |||||||||||| ||||||||  || ||| ||| |||||||||||||||||    
T  46428272 ttcgtccaactgttatgatttacattttgactttaaaactatgcgaagatacaattatttt 46428332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 64; Significance: 6e-28; HSPs: 4)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 103 - 201
Target Start/End: Complemental strand, 5708 - 5609
Alignment:
Q  103 tgtattaatatatt-ctttgcggttgaattaatttacatttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaattatttt 201  Q
    |||||||||||||| |||||||||||||||||||| |||||| ||||| | |||||||||||||||| || |||||||||||||||||||||||| ||||    
T  5708 tgtattaatatatttctttgcggttgaattaatttgcatttcatccatctattatgatttagatttttaccgtagaaccatgggaagatacaattctttt 5609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 4629 - 4509
Alignment:
Q  23 catagaggaaaattctcatgtgacaaccaacccgtttcttgatgagatgcaagaagtagaaagtaagttttactcaacactgtattaatatattctttgc 122  Q
    ||||||||||||  ||| |||||||| ||||||| |||||   ||||| ||||||| |||||||||||||||||||    ||||||||||| ||||||||    
T  4629 catagaggaaaagcctcgtgtgacaatcaacccgattcttctcgagatacaagaagcagaaagtaagttttactcagtcttgtattaatatgttctttgc 4530  T
Q  123 ggttgaattaatttacatttc 143  Q
    |||||||||||||| ||||||    
T  4529 ggttgaattaatttgcatttc 4509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 4192 - 4145
Alignment:
Q  201 tgtgaaaatgctagctcttgattgagtgttaatatgcacataagttgg 248  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  4192 tgtgaaaatgctagctctagattgagtgttaatatgcacataagttgg 4145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 4248 - 4206
Alignment:
Q  159 tttagattttgacggtagaaccatgggaagatacaattatttt 201  Q
    |||| |||||||||||||||||||||||| |||||||| ||||    
T  4248 tttaaattttgacggtagaaccatgggaaaatacaattctttt 4206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 1e-26; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 21 - 248
Target Start/End: Original strand, 50668383 - 50668626
Alignment:
Q  21 agcatagaggaaaattctcatgtgacaaccaacccgtttcttgatgagatgcaagaagtagaaagtaagttttactcaacac--tgtattaatatattct 118  Q
    |||||||||| | | |||| |||||| ||||| |||||| ||| |||||  ||||||||||||||||||||||||||   |   ||||||||||| ||||    
T  50668383 agcatagagggagagtctcttgtgacgaccaaaccgtttgttgctgagaaacaagaagtagaaagtaagttttactcttgatgttgtattaatatgttct 50668482  T
Q  119 ttgcggttgaattaatttacatttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaattat--------------tttgtg 204  Q
    |||| ||||||||||| | || ||| ||||||||| |||||||||||||||||  ||||| |||| ||| ||| |||| |              ||| ||    
T  50668483 ttgcagttgaattaatctgcacttcatccatttgtcatgatttagattttgactttagaagcatgtgaaaatagaattctttttgctttactgctttatg 50668582  T
Q  205 aaaatgctagctcttgattgagtgttaatatgcacataagttgg 248  Q
    ||||||| |||||||||| |||||||||||||||||||||||||    
T  50668583 aaaatgcaagctcttgatcgagtgttaatatgcacataagttgg 50668626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 73 - 201
Target Start/End: Original strand, 50667974 - 50668102
Alignment:
Q  73 aagaagtagaaagtaagttttactcaacactgtattaatatattctttgcggttgaattaatttacatttcgtccatttgttatgatttagattttgacg 172  Q
    |||||||||||||||||||| |||| |   |||| | |||| |||||||| ||||||||| ||| || ||||||||| ||| |||||||| ||||||||     
T  50667974 aagaagtagaaagtaagtttcactcgatgttgtaatcatatgttctttgcagttgaattagtttgcacttcgtccatatgtcatgatttaaattttgact 50668073  T
Q  173 gtagaaccatgggaagatacaattatttt 201  Q
     |||||||||| |||||||||||| ||||    
T  50668074 ttagaaccatgtgaagatacaattttttt 50668102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 3802664 - 3802615
Alignment:
Q  196 tattttgtgaaaatgctagctcttgattgagtgttaatatgcacataagt 245  Q
    |||||| ||||||||| | |||||||||||||||||||||||||||||||    
T  3802664 tattttatgaaaatgcaacctcttgattgagtgttaatatgcacataagt 3802615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 3801812 - 3801754
Alignment:
Q  138 catttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaatt 196  Q
    |||||| ||||| |||||||||||||||||||||  || ||||||| ||||| ||||||    
T  3801812 catttcatccatctgttatgatttagattttgactttaaaaccatgtgaagacacaatt 3801754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 201
Target Start/End: Original strand, 50667366 - 50667440
Alignment:
Q  127 gaattaatttacatttcgtccatttgttatgatttagattttgacggtagaaccatgggaagatacaattatttt 201  Q
    |||||||||| || ||| ||| ||||| |||||||||||||||||  ||||||||||  ||||| ||||| ||||    
T  50667366 gaattaattttcacttcatccttttgtcatgatttagattttgactttagaaccatgtcaagatgcaattctttt 50667440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 246
Target Start/End: Complemental strand, 3804100 - 3804059
Alignment:
Q  205 aaaatgctagctcttgattgagtgttaatatgcacataagtt 246  Q
    ||||||| ||||||||||||||||||||||||  ||||||||    
T  3804100 aaaatgcaagctcttgattgagtgttaatatgtgcataagtt 3804059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 50668119 - 50668164
Alignment:
Q  203 tgaaaatgctagctcttgattgagtgttaatatgcacataagttgg 248  Q
    ||||||||| ||||||| ||||| ||||||||||||| ||||||||    
T  50668119 tgaaaatgcaagctcttaattgaatgttaatatgcacgtaagttgg 50668164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 3802225 - 3802173
Alignment:
Q  196 tattttgtgaaaatgctagctcttgattgagtgttaatatgcacataagttgg 248  Q
    |||||| ||||||| | | |||||| ||||||||||||||||||||| |||||    
T  3802225 tattttatgaaaatacaacctcttgtttgagtgttaatatgcacataggttgg 3802173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 248
Target Start/End: Original strand, 50669344 - 50669388
Alignment:
Q  204 gaaaatgctagctcttgattgagtgttaatatgcacataagttgg 248  Q
    |||||||||||||  ||||| |||||||||| |||||||||||||    
T  50669344 gaaaatgctagctactgattcagtgttaatacgcacataagttgg 50669388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 7147 - 7027
Alignment:
Q  23 catagaggaaaattctcatgtgacaaccaacccgtttcttgatgagatgcaagaagtagaaagtaagttttactcaacactgtattaatatattctttgc 122  Q
    ||||||||||||  ||| |||||||| ||||||| |||||   ||||| ||||||| ||| |||||||||||||||    ||||||||||| ||||||||    
T  7147 catagaggaaaagcctcgtgtgacaatcaacccgattcttcccgagatacaagaagcagagagtaagttttactcagtcttgtattaatatgttctttgc 7048  T
Q  123 ggttgaattaatttacatttc 143  Q
    |||||||||||||| ||||||    
T  7047 ggttgaattaatttgcatttc 7027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 201 - 248
Target Start/End: Complemental strand, 6753 - 6706
Alignment:
Q  201 tgtgaaaatgctagctcttgattgagtgttaatatgcacataagttgg 248  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6753 tgtgaaaatgctagctcttgattgagtgttaatatgcacataagttgg 6706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 7909 - 7857
Alignment:
Q  115 ttctttgcggttgaattaatttacatttcgtccatttgttatgatttagattt 167  Q
    |||||||||||||||||||||| |||||| ||||| | |||||||||||||||    
T  7909 ttctttgcggttgaattaatttgcatttcatccatctattatgatttagattt 7857  T

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Target: scaffold0079; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 266 - 327
Target Start/End: Complemental strand, 6625 - 6559
Alignment:
Q  266 tttgtcttctattatgtttttgccttgtccttttc-----aactttcagccatattgaaatatcctc 327  Q
    |||||||| | |||||||||||||||||| |||||     |||||||||||||||| ||||||||||    
T  6625 tttgtctttttttatgtttttgccttgtctttttctttttaactttcagccatatttaaatatcctc 6559  T

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Target: scaffold0079; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 201
Target Start/End: Complemental strand, 6809 - 6767
Alignment:
Q  159 tttagattttgacggtagaaccatgggaagatacaattatttt 201  Q
    |||| |||||||||||||||||||||||| |||||||| ||||    
T  6809 tttaaattttgacggtagaaccatgggaaaatacaattctttt 6767  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 136
Target Start/End: Original strand, 8185984 - 8186079
Alignment:
Q  41 tgtgacaaccaacccgtttcttgatgagatgcaagaagtagaaagtaagttttactcaacactgtattaatatattctttgcggttgaattaattt 136  Q
    |||||| ||||||| |||| |||  |||| |||||| ||||||||||||||||||||||   ||||||||||| |||||||| |||||||||||||    
T  8185984 tgtgacgaccaacctgttttttgccgagaagcaagatgtagaaagtaagttttactcaatgttgtattaatatgttctttgcagttgaattaattt 8186079  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 213 - 244
Target Start/End: Complemental strand, 4525308 - 4525277
Alignment:
Q  213 agctcttgattgagtgttaatatgcacataag 244  Q
    ||||||||||||||||||||||||||||||||    
T  4525308 agctcttgattgagtgttaatatgcacataag 4525277  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 244
Target Start/End: Complemental strand, 4522950 - 4522904
Alignment:
Q  198 ttttgtgaaaatgctagctcttgattgagtgttaatatgcacataag 244  Q
    |||| ||||||| | |||||||||||||||||||| |||||||||||    
T  4522950 ttttatgaaaattcaagctcttgattgagtgttaaaatgcacataag 4522904  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 39328272 - 39328310
Alignment:
Q  157 gatttagattttgacggtagaaccatgggaagatacaat 195  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  39328272 gatttagattttgactgtagaaccatgtgaagatacaat 39328310  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 136
Target Start/End: Original strand, 715259 - 715350
Alignment:
Q  41 tgtgacaaccaacccgtttcttgatgagatgcaagaagtagaaagtaagttttactcaacactgtattaatatattctttgcggttgaattaattt 136  Q
    |||||||| | | |||||||||  | ||| ||||||||||||||||    |||||||||   ||||||||||| ||||||| ||||||||||||||    
T  715259 tgtgacaagcgaaccgtttctttcttagaagcaagaagtagaaagt----tttactcaatgttgtattaatatgttctttgtggttgaattaattt 715350  T

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