View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_high_35 (Length: 298)
Name: NF11575_high_35
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_high_35 |
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Alignment Details
Target: chr4 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 35409589 - 35409305
Alignment:
| Q |
1 |
tgaggaatatataggacatagaaatgacaagacttcttggttgggagaatctgagatcattgatgcattcaaccaattttcaaatgacatgaaagatatt |
100 |
Q |
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| T |
35409589 |
tgaggaatatataggacatagaaatgacaagacttcttggttgggagaatctgagatcattgatgcattcaaccaattttcaaatgacatgaaagatatt |
35409490 |
T |
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| Q |
101 |
gagaaggagattgacagaagaaatgccgatccaaaacttaggaaccgatgtggccatggggtttcaccatatgaattgctaatacctagctcaggatgtg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
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| T |
35409489 |
gagaaggagattgacagaagaaatgccgatccaaaacttaggaaccgatgtggccatggagtttcaccatatgaattgttaatacctagctcaggatgtg |
35409390 |
T |
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| Q |
201 |
gcgccactggacgaggagtgccaaatagtgcaacagcctaacagtttaatatgcgaagaaagaccagccacggaatatcacacct |
285 |
Q |
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| T |
35409389 |
gcgccactggacgaggagtgccaaatagtgcaacagcctaacagtttaatatgcgaagaaagaccagccacggaatatcacacct |
35409305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 35408227 - 35407975
Alignment:
| Q |
1 |
tgaggaatatataggacatagaaatgacaagacttcttggttgggagaatctgagatcattgatgcattcaaccaattttcaaatgacatgaaagatatt |
100 |
Q |
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|||||||||||||||| |||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
35408227 |
tgaggaatatataggagatagaaatgacaagtcttcatggtttggagaatctgagatcattgatgcattcaaccaattttcaatggacatgaaaaatatt |
35408128 |
T |
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| Q |
101 |
gagaaggagattgacagaagaaatgccgatccaaaacttaggaaccgatgtggccatggggtttcaccatatgaattgctaatacctagctcaggatgtg |
200 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||| |||| ||||| ||||| ||||| | |
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| T |
35408127 |
gagaaggagattgacagaagaaatatcgatccaaaacttaggaatcgatgtggccatggagtttcaccatatgaactgcttataccaagctcgggatgcg |
35408028 |
T |
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| Q |
201 |
gcgccactggacgaggagtgccaaatagtgcaacagcctaacagtttaatatg |
253 |
Q |
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| |||||||||||| | ||||||||||||||||||||||| |||||||||||| |
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| T |
35408027 |
gtgccactggacgatgggtgccaaatagtgcaacagcctagcagtttaatatg |
35407975 |
T |
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