View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11575_high_36 (Length: 291)

Name: NF11575_high_36
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11575_high_36
NF11575_high_36
[»] chr3 (21 HSPs)
chr3 (18-270)||(31219110-31219362)
chr3 (67-189)||(20704952-20705075)
chr3 (46-215)||(26665420-26665590)
chr3 (87-220)||(15462015-15462148)
chr3 (85-173)||(22318225-22318313)
chr3 (85-214)||(51715009-51715137)
chr3 (100-169)||(33995656-33995725)
chr3 (91-195)||(25838079-25838183)
chr3 (83-214)||(30670824-30670956)
chr3 (85-144)||(42110949-42111008)
chr3 (57-158)||(21435605-21435704)
chr3 (85-214)||(7925341-7925470)
chr3 (98-168)||(1750111-1750182)
chr3 (87-214)||(43726566-43726693)
chr3 (46-144)||(53852033-53852130)
chr3 (84-134)||(26988662-26988712)
chr3 (86-124)||(39745531-39745569)
chr3 (98-168)||(44053406-44053476)
chr3 (81-160)||(9274277-9274356)
chr3 (80-168)||(36679237-36679324)
chr3 (80-168)||(36692852-36692939)
[»] chr5 (19 HSPs)
chr5 (55-170)||(22017651-22017766)
chr5 (117-214)||(8217104-8217200)
chr5 (83-179)||(28503226-28503322)
chr5 (55-168)||(17827194-17827308)
chr5 (63-168)||(17223111-17223217)
chr5 (92-181)||(23994346-23994435)
chr5 (98-168)||(40491719-40491790)
chr5 (99-159)||(22023749-22023810)
chr5 (86-193)||(18401231-18401339)
chr5 (124-168)||(36183368-36183412)
chr5 (99-179)||(7765208-7765288)
chr5 (59-154)||(38290800-38290895)
chr5 (85-168)||(32177012-32177095)
chr5 (103-214)||(35323601-35323712)
chr5 (101-179)||(29134155-29134233)
chr5 (86-216)||(33043862-33043991)
chr5 (87-144)||(13169704-13169761)
chr5 (106-182)||(20228967-20229044)
chr5 (98-150)||(27707185-27707237)
[»] chr2 (15 HSPs)
chr2 (65-221)||(24510886-24511042)
chr2 (55-181)||(38308029-38308156)
chr2 (50-214)||(13019597-13019762)
chr2 (85-214)||(43050111-43050240)
chr2 (83-180)||(775024-775121)
chr2 (91-181)||(22417270-22417355)
chr2 (92-213)||(22442684-22442805)
chr2 (74-134)||(19943459-19943519)
chr2 (117-179)||(23046575-23046637)
chr2 (62-168)||(37267756-37267862)
chr2 (127-172)||(19572607-19572652)
chr2 (56-108)||(28245087-28245139)
chr2 (55-202)||(10696305-10696452)
chr2 (103-172)||(5867943-5868012)
chr2 (132-181)||(28816184-28816233)
[»] chr6 (21 HSPs)
chr6 (85-182)||(9929325-9929422)
chr6 (55-214)||(29389115-29389274)
chr6 (83-181)||(31596511-31596610)
chr6 (92-181)||(18075514-18075603)
chr6 (56-179)||(30525776-30525900)
chr6 (67-221)||(29263777-29263932)
chr6 (85-181)||(989518-989614)
chr6 (87-172)||(33192030-33192117)
chr6 (87-169)||(2396755-2396837)
chr6 (89-167)||(10242516-10242594)
chr6 (55-181)||(33240809-33240934)
chr6 (141-189)||(13214204-13214252)
chr6 (99-173)||(13208730-13208804)
chr6 (55-126)||(17131223-17131296)
chr6 (74-172)||(21974755-21974853)
chr6 (86-160)||(34949029-34949103)
chr6 (87-144)||(6359071-6359128)
chr6 (141-214)||(7591055-7591128)
chr6 (74-215)||(9540503-9540644)
chr6 (129-182)||(20207190-20207243)
chr6 (129-182)||(22101213-22101266)
[»] chr8 (12 HSPs)
chr8 (100-215)||(37507534-37507649)
chr8 (74-195)||(39555875-39555995)
chr8 (94-181)||(40899656-40899744)
chr8 (86-189)||(7685453-7685555)
chr8 (83-179)||(37325116-37325212)
chr8 (99-179)||(7632687-7632768)
chr8 (86-172)||(13818783-13818869)
chr8 (85-214)||(27157657-27157786)
chr8 (129-182)||(26462365-26462418)
chr8 (86-185)||(4656562-4656662)
chr8 (83-168)||(31078765-31078850)
chr8 (93-146)||(41530358-41530411)
[»] scaffold0071 (1 HSPs)
scaffold0071 (87-220)||(44-177)
[»] chr1 (15 HSPs)
chr1 (65-181)||(17339688-17339804)
chr1 (56-181)||(37865414-37865540)
chr1 (98-168)||(2749181-2749251)
chr1 (85-214)||(46939945-46940075)
chr1 (80-172)||(31767888-31767980)
chr1 (113-182)||(48400943-48401012)
chr1 (92-179)||(51474000-51474086)
chr1 (85-144)||(18639008-18639067)
chr1 (93-182)||(32556488-32556577)
chr1 (126-214)||(7439095-7439183)
chr1 (101-179)||(23404910-23404988)
chr1 (46-144)||(30527649-30527746)
chr1 (83-168)||(434943-435027)
chr1 (87-180)||(14874407-14874500)
chr1 (46-122)||(35814467-35814543)
[»] chr4 (13 HSPs)
chr4 (87-210)||(41945199-41945321)
chr4 (99-182)||(39791231-39791314)
chr4 (55-214)||(26988899-26989059)
chr4 (86-178)||(9689443-9689535)
chr4 (56-170)||(8938827-8938942)
chr4 (86-168)||(7257554-7257636)
chr4 (92-189)||(12311825-12311923)
chr4 (91-145)||(37211081-37211135)
chr4 (74-172)||(39927461-39927559)
chr4 (118-210)||(9603867-9603959)
chr4 (86-135)||(24234013-24234062)
chr4 (98-135)||(53689083-53689120)
chr4 (86-169)||(38303296-38303380)
[»] chr7 (10 HSPs)
chr7 (85-215)||(35356355-35356484)
chr7 (83-173)||(35424864-35424954)
chr7 (92-173)||(22713411-22713493)
chr7 (86-168)||(3255112-3255195)
chr7 (99-179)||(4451853-4451933)
chr7 (99-172)||(17115923-17115997)
chr7 (56-144)||(40172455-40172543)
chr7 (56-122)||(26971331-26971397)
chr7 (83-127)||(17298449-17298493)
chr7 (85-125)||(36645842-36645882)
[»] scaffold0110 (1 HSPs)
scaffold0110 (87-172)||(6446-6532)


Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 270
Target Start/End: Complemental strand, 31219362 - 31219110
Alignment:
Q  18 caacccgcttgctactgggctacaaattagactgctacttttcccaccctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggc 117  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31219362 caacccgcttgctactgggctacaaattagactgctgcttttcccaccctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggc 31219263  T
Q  118 ataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaataggatgcgcgataaattcgtagggtgggaaaagt-aaca 216  Q
    |||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  31219262 ataaactccccat-aaaacctccaaaacatgctgaaacatttcagattttaaaatttgaataggatgcacgataaattcgtagggtgggaaaagtaaaca 31219164  T
Q  217 atctacaaattattatcactgcaggctgtgcgggccaacagatcagcctggccc 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31219163 atctacaaattattatcactgcaggctgtgcgggccaacagatcagcctggccc 31219110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 67 - 189
Target Start/End: Complemental strand, 20705075 - 20704952
Alignment:
Q  67 tatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctcc-aaaacatgttgaaacatttcagatt 165  Q
    ||||||||||| || |||||||||||||| |||||||||||||| ||||| || |||| | ||||||||||||| |||| ||||| |||||||||| |||    
T  20705075 tatgaacttctcgcatgtcctatgcagtttagattatagaatccaaacggtatcaacatctcataaaaacctccaaaaatatgttaaaacatttcaaatt 20704976  T
Q  166 ttaaaatttgaataggatgcgcga 189  Q
    ||||||| ||||||| ||||||||    
T  20704975 ttaaaatctgaatagaatgcgcga 20704952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 46 - 215
Target Start/End: Original strand, 26665420 - 26665590
Alignment:
Q  46 agactgctacttttcccaccctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctc-caaaa 144  Q
    |||||||| ||||||||||| |||||  |||| ||| | |||||||||||   |||||||||||||||||||||||||| ||||||||||  ||  ||||    
T  26665420 agactgcttcttttcccaccatatgagtttctcgcgcgccctatgcagtttgaattatagaatccgaacggcataaacaacccataaaaatttcggaaaa 26665519  T
Q  145 catgttgaaacatttcagattttaaaatttgaataggatgcgcgataaattcgtagggtgggaaaagtaac 215  Q
    |||||||||| ||||| |||||||||||   ||||||| |||||| ||| || |||| |||||||| ||||    
T  26665520 catgttgaaatatttcggattttaaaatccaaataggacgcgcgagaaactcataggatgggaaaaataac 26665590  T

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Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 87 - 220
Target Start/End: Complemental strand, 15462148 - 15462015
Alignment:
Q  87 tatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaataggatgcg 186  Q
    ||||||||||  |||||||||||| |||||||||||||||||||||||||||| |||||| ||| ||| ||||||||||||||| ||| |||| | || |    
T  15462148 tatgcagttcgaattatagaatccaaacggcataaacaccccataaaaacctctaaaacacgtttaaatatttcagattttaaattttaaataaggtgtg 15462049  T
Q  187 cgataaattcgtagggtgggaaaagtaacaatct 220  Q
    ||| ||| || |||||||  |||| |||||||||    
T  15462048 cgaaaaactcatagggtgaaaaaaataacaatct 15462015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 22318313 - 22318225
Alignment:
Q  85 cctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatt 173  Q
    |||||||||||| ||||||||||| ||||  ||||||||| | ||||||||||| ||||||||||| |||||||||| |||||||||||    
T  22318313 cctatgcagttcggattatagaattcgaatagcataaacatctcataaaaaccttcaaaacatgttaaaacatttcatattttaaaatt 22318225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 85 - 214
Target Start/End: Complemental strand, 51715137 - 51715009
Alignment:
Q  85 cctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaataggatg 184  Q
    ||||||||||||  |  |||||||| |||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||  |||| ||  |    
T  51715137 cctatgcagttcgaaaaatagaatc-gaacagcataaacaccccataaaaacctccaaaacacgttaaaacatttcagattttagaatccgaatcgggcg 51715039  T
Q  185 cgcgataaattcgtagggtgggaaaagtaa 214  Q
    ||||| ||| ||||| | || |||||||||    
T  51715038 cgcgagaaactcgtatgatgagaaaagtaa 51715009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 33995725 - 33995656
Alignment:
Q  100 ttatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaa 169  Q
    ||||||||||| |||  |||||| | |||||||||||||||||||||  |||||||||||||||||||||    
T  33995725 ttatagaatccaaacaacataaatatcccataaaaacctccaaaacacattgaaacatttcagattttaa 33995656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 91 - 195
Target Start/End: Complemental strand, 25838183 - 25838079
Alignment:
Q  91 cagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaataggatgcgcgat 190  Q
    ||||| ||||||||||||||||||  |||| | | || ||||||||||| |||||||||||||| ||||  ||||||| ||| ||||||||| || |||     
T  25838183 cagtttagattatagaatccgaacaacatagatagcctataaaaacctcaaaaacatgttgaaatattttggattttagaatctgaataggacgcacgaa 25838084  T
Q  191 aaatt 195  Q
    |||||    
T  25838083 aaatt 25838079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 83 - 214
Target Start/End: Original strand, 30670824 - 30670956
Alignment:
Q  83 gtcctatgcagttcagattatagaatccgaacggcataaacacccc-ataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaatagg 181  Q
    |||||||| |||| | |||||||||| ||||| ||||||||||||| |||||||  | |||||||  || ||||||||||||||||| |||  ||||| |    
T  30670824 gtcctatgtagtttaaattatagaattcgaacagcataaacacccctataaaaattttcaaaacacattaaaacatttcagattttagaatccgaataag 30670923  T
Q  182 atgcgcgataaattcgtagggtgggaaaagtaa 214  Q
    |||||||| ||| || |||  || |||||||||    
T  30670924 atgcgcgagaaactcatagtatgagaaaagtaa 30670956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 42110949 - 42111008
Alignment:
Q  85 cctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaa 144  Q
    ||||||||| |  ||||||||||| |||||| ||||||||||||||||||||||||||||    
T  42110949 cctatgcaggttggattatagaattcgaacgacataaacaccccataaaaacctccaaaa 42111008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 57 - 158
Target Start/End: Complemental strand, 21435704 - 21435605
Alignment:
Q  57 tttcccaccctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaaca 156  Q
    ||||| ||||||| |  |||||||||| |||||||||||| ||||||||||| ||||||  | ||| || | || ||||||||||||||| |||||||||    
T  21435704 tttcctaccctataagtttcttgcgtgccctatgcagttcggattatagaattcgaacg--acaaatactctatcaaaacctccaaaacacgttgaaaca 21435607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 214
Target Start/End: Complemental strand, 7925470 - 7925341
Alignment:
Q  85 cctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaataggatg 184  Q
    ||||||| |||| || |||||||| |||| || |||||||||| |||||| | |  |||| | ||||||| ||||||||||||| ||| | |||||||      
T  7925470 cctatgcggttcggaatatagaattcgaatggtataaacaccctataaaaccttaaaaaatacgttgaaatatttcagattttagaatctaaataggaca 7925371  T
Q  185 cgcgataaattcgtagggtgggaaaagtaa 214  Q
    || || |||||| |||||||| ||||||||    
T  7925370 cgtgagaaattcatagggtggaaaaagtaa 7925341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 1750182 - 1750111
Alignment:
Q  98 gattatagaatccgaacggcataaacaccccataaaaacctcc-aaaacatgttgaaacatttcagatttta 168  Q
    ||||||||||||||||||  |||||||||| ||| |||||||| ||| || |||||||||||| ||||||||    
T  1750182 gattatagaatccgaacgaaataaacaccctatacaaacctcctaaatcacgttgaaacattttagatttta 1750111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 43726693 - 43726566
Alignment:
Q  87 tatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaataggatgcg 186  Q
    |||| ||||| ||||||| ||| |||||   ||||||||| ||| |||||||| |||||||| | ||| ||||| ||||||||||||  ||||||  |||    
T  43726693 tatgtagttcggattatataattcgaactatataaacacctcatcaaaacctctaaaacatgataaaatatttctgattttaaaattctaatagggcgcg 43726594  T
Q  187 cgataaattcgtagggtgggaaaagtaa 214  Q
    ||| ||| || || ||||| ||||||||    
T  43726593 cgagaaactcataaggtggaaaaagtaa 43726566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 53852033 - 53852130
Alignment:
Q  46 agactgctacttttcccaccctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaa 144  Q
    |||| ||| ||||||||||| |||||  |||||||  | |||||| ||||| |||||||||||  ||| |||||||| | |||||||||||||||||||    
T  53852033 agaccgcttcttttcccaccgtatgagtttcttgctcgccctatgtagttcggattatagaatttgaatggcataaata-cccataaaaacctccaaaa 53852130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 134
Target Start/End: Original strand, 26988662 - 26988712
Alignment:
Q  84 tcctatgcagttcagattatagaatccgaacggcataaacaccccataaaa 134  Q
    ||||||||||| |||||||||||||   |||||||||||||| ||||||||    
T  26988662 tcctatgcagtccagattatagaatttaaacggcataaacactccataaaa 26988712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 124
Target Start/End: Original strand, 39745531 - 39745569
Alignment:
Q  86 ctatgcagttcagattatagaatccgaacggcataaaca 124  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  39745531 ctatgcagttcggattataggatccgaacggcataaaca 39745569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 44053476 - 44053406
Alignment:
Q  98 gattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagatttta 168  Q
    ||||||| || |||||||||||||| | |||||||||||||||||| || ||| ||| ||||  |||||||    
T  44053476 gattatataacccgaacggcataaatatcccataaaaacctccaaagcacgttaaaatattttggatttta 44053406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 9274356 - 9274277
Alignment:
Q  81 gtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacc-tccaaaacatgttgaaacatttc 160  Q
    |||||||||| |||||||||||||||||  |||||| ||||| |  | ||||||||| || ||||||| ||||||||||||    
T  9274356 gtgtcctatgtagttcagattatagaatttgaacggtataaataatctataaaaaccttcaaaaacat-ttgaaacatttc 9274277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 36679237 - 36679324
Alignment:
Q  80 cgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagatttta 168  Q
    ||||||||||||||||  |||| |||||||| ||| ||||||| ||| | ||||||| || |||| |  |||||| |||||||||||||    
T  36679237 cgtgtcctatgcagttg-gattttagaatccaaactgcataaaaacctcgtaaaaacttcaaaaaaacattgaaatatttcagatttta 36679324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 168
Target Start/End: Original strand, 36692852 - 36692939
Alignment:
Q  80 cgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagatttta 168  Q
    ||||||||||||||||  |||| |||||||| ||| ||||||| ||| | ||||||| || |||| |  |||||| |||||||||||||    
T  36692852 cgtgtcctatgcagttg-gattttagaatccaaactgcataaaaacctcgtaaaaacttcaaaaatacattgaaatatttcagatttta 36692939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 55 - 170
Target Start/End: Complemental strand, 22017766 - 22017651
Alignment:
Q  55 cttttcccaccctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctcc-aaaacatgttgaa 153  Q
    ||||||||||| |||||  |||||||  |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||  ||||||    
T  22017766 cttttcccacc-tatgagtttcttgcacgtcctatgcagttcggattatagaatccgaatggcataaacaccccataaaaacctccaaaaacgcgttgaa 22017668  T
Q  154 acatttcagattttaaa 170  Q
    |||||||||||||||||    
T  22017667 acatttcagattttaaa 22017651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 117 - 214
Target Start/End: Complemental strand, 8217200 - 8217104
Alignment:
Q  117 cataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaataggatgcgcgataaattcgtagggtgggaaaagtaa 214  Q
    ||||||||||||||||||| ||| |||||| ||| ||||||||||||||||| ||||||||||||  |||||| ||| ||||| ||||||||||||||    
T  8217200 cataaacaccccataaaaatctcaaaaacacgttaaaacatttcagattttagaatttgaatagggcgcgcgagaaactcgta-ggtgggaaaagtaa 8217104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 179
Target Start/End: Original strand, 28503226 - 28503322
Alignment:
Q  83 gtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaata 179  Q
    |||||||||||||  ||||||| ||| ||||||||||||| || |||||||||||||||||| | ||||||| ||||||||||||| |||| |||||    
T  28503226 gtcctatgcagtttggattataaaattcgaacggcataaatactccataaaaacctccaaaatacgttgaaatatttcagattttagaattcgaata 28503322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 55 - 168
Target Start/End: Complemental strand, 17827308 - 17827194
Alignment:
Q  55 cttttcccaccctatgaactt-cttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaa 153  Q
    ||||||||||||||| || || ||||| || |||||||||||||||||||| |||||||||| |||  |||||| |||||| ||| ||||||||||| ||    
T  17827308 cttttcccaccctattaagtttcttgcttgccctatgcagttcagattataaaatccgaacgacattgacaccctataaaatccttcaaaacatgttaaa 17827209  T
Q  154 acatttcagatttta 168  Q
    | ||||  |||||||    
T  17827208 atattttggatttta 17827194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 17223217 - 17223111
Alignment:
Q  63 accctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacct-ccaaaacatgttgaaacatttca 161  Q
    ||||||||| ||||| | || ||||||||||||   |||||||||||||||| | ||| ||||| ||||||||||| | |||||| ||||||| ||||||    
T  17223217 accctatgagcttctcgtgtctcctatgcagtttgaattatagaatccgaacagtatacacacctcataaaaacctgcaaaaacacgttgaaatatttca 17223118  T
Q  162 gatttta 168  Q
    |||||||    
T  17223117 gatttta 17223111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 23994346 - 23994435
Alignment:
Q  92 agttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaatagg 181  Q
    |||| |||||||| |||||||||  |||||||||||||| ||||||||||||||||||| ||||  | || |||||| |||| |||||||    
T  23994346 agtttagattatataatccgaacaacataaacaccccatgaaaacctccaaaacatgttaaaactatacaaattttataattcgaatagg 23994435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 40491790 - 40491719
Alignment:
Q  98 gattatagaatccgaacggcataaacaccccataaaaacctcc-aaaacatgttgaaacatttcagatttta 168  Q
    ||||||||||||  ||||||||||||||| ||||||||||||| |||||| ||||||||||||  |||||||    
T  40491790 gattatagaatctaaacggcataaacacctcataaaaacctccaaaaacacgttgaaacattttggatttta 40491719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 99 - 159
Target Start/End: Original strand, 22023749 - 22023810
Alignment:
Q  99 attatagaatccgaacggcataaacaccccataaaaacctcc-aaaacatgttgaaacattt 159  Q
    |||||||||| | |||||||||||||||| ||||||| |||| |||||||||||||||||||    
T  22023749 attatagaattccaacggcataaacaccctataaaaagctccaaaaacatgttgaaacattt 22023810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 86 - 193
Target Start/End: Complemental strand, 18401339 - 18401231
Alignment:
Q  86 ctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaa-catgttgaaacatttcagattttaaaatttgaataggatg 184  Q
    ||||||||||| || |||||||| | ||  ||||||||||| |||| | |||||||||| || |||||||||||||||||| || ||| ||||||| |      
T  18401339 ctatgcagttcggaatatagaattcaaaaagcataaacacctcatacagacctccaaaaacacgttgaaacatttcagattctataatctgaatagaaca 18401240  T
Q  185 cgcgataaa 193  Q
    |||||||||    
T  18401239 cgcgataaa 18401231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 36183412 - 36183368
Alignment:
Q  124 accccataaaaacctccaaaacatgttgaaacatttcagatttta 168  Q
    ||||||||||||||||||||| ||||||||||||||| |||||||    
T  36183412 accccataaaaacctccaaaatatgttgaaacatttcggatttta 36183368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 7765208 - 7765288
Alignment:
Q  99 attatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaata 179  Q
    ||||||||||| |||| | |||||||  | |||||||  || |||||| ||||||| ||||| ||||||||||||||||||    
T  7765208 attatagaatctgaactgtataaacattcaataaaaatatcaaaaacacgttgaaatatttcggattttaaaatttgaata 7765288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 59 - 154
Target Start/End: Complemental strand, 38290895 - 38290800
Alignment:
Q  59 tcccaccctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaa-catgttgaaa 154  Q
    ||||||||||||| |||||  |  | |||||| |||||||||| |||||||| ||| | ||||| ||||||||||| ||||||||| ||||||||||    
T  38290895 tcccaccctatgagcttctcacacgccctatgtagttcagattttagaatccaaactgaataaaaaccccataaaa-cctccaaaaacatgttgaaa 38290800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 85 - 168
Target Start/End: Complemental strand, 32177095 - 32177012
Alignment:
Q  85 cctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagatttta 168  Q
    ||||||| |||| ||||||  ||||| | | |||||||||   ||| ||||||||||||||||||| ||| |||||||||||||    
T  32177095 cctatgcggttcggattatctaatcccaccagcataaacagttcattaaaacctccaaaacatgttaaaatatttcagatttta 32177012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 103 - 214
Target Start/End: Complemental strand, 35323712 - 35323601
Alignment:
Q  103 tagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaataggatgcgcgataaattcgtaggg 202  Q
    |||||||||||| ||||||| ||||  ||||| | || |||| | ||||||| ||||| ||||||| ||| ||||||||| || ||| ||  || || ||    
T  35323712 tagaatccgaactgcataaaaaccctgtaaaaccttcaaaaatacgttgaaatatttcggattttagaatctgaataggacgcacgagaatctcataagg 35323613  T
Q  203 tgggaaaagtaa 214  Q
    ||||||||||||    
T  35323612 tgggaaaagtaa 35323601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 179
Target Start/End: Original strand, 29134155 - 29134233
Alignment:
Q  101 tatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaata 179  Q
    |||| ||||| ||||  |||||||||  ||||||| ||||||||||  |  ||||||||||||||||||||| ||||||    
T  29134155 tataaaatccaaacgatataaacaccatataaaaatctccaaaacaaataaaaacatttcagattttaaaatctgaata 29134233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 216
Target Start/End: Complemental strand, 33043991 - 33043862
Alignment:
Q  86 ctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaataggatgc 185  Q
    |||| |||||| ||||||| | | |||||| ||||||||| |||||||| | |  |||||| ||| ||| ||||||||||||| ||||| |||||| ||     
T  33043991 ctatacagttcggattataaatttcgaacg-cataaacactccataaaatcttttaaaacacgttaaaatatttcagattttagaatttaaatagggtgt 33043893  T
Q  186 gcgataaattcgtagggtgggaaaagtaaca 216  Q
    || | ||| || |||| ||| ||||||||||    
T  33043892 gcaagaaactcataggatggaaaaagtaaca 33043862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 13169704 - 13169761
Alignment:
Q  87 tatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaa 144  Q
    ||||||||||   ||||| |||||||||| ||| ||||| ||||||||||||||||||    
T  13169704 tatgcagttcgagttatataatccgaacgacatcaacactccataaaaacctccaaaa 13169761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 182
Target Start/End: Complemental strand, 20229044 - 20228967
Alignment:
Q  106 aatccgaacggcataaacaccccataaaaacctccaaaa-catgttgaaacatttcagattttaaaatttgaatagga 182  Q
    |||||||| | |||||| ||| |||||||| || ||||| ||   |||||||||||||||||| ||||||||||||||    
T  20229044 aatccgaatgacataaatacctcataaaaatcttcaaaaacacaatgaaacatttcagatttttaaatttgaatagga 20228967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 27707185 - 27707237
Alignment:
Q  98 gattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgtt 150  Q
    |||||||||||||||| |  ||||||| ||||||||||  |||||||||||||    
T  27707185 gattatagaatccgaatgatataaacatcccataaaaatttccaaaacatgtt 27707237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 5e-31; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 65 - 221
Target Start/End: Complemental strand, 24511042 - 24510886
Alignment:
Q  65 cctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagat 164  Q
    |||||||| |||| ||||  ||||||||||||  |||||||||| | ||||||||||||| ||||||||||||||||||| | ||| ||| |||||||||    
T  24511042 cctatgaatttctcgcgttccctatgcagttcgaattatagaattcaaacggcataaacatcccataaaaacctccaaaatacgtttaaatatttcagat 24510943  T
Q  165 tttaaaatttgaataggatgcgcgataaattcgtagggtgggaaaagtaacaatcta 221  Q
    ||||||||  ||||||| || | || ||| || |||||||| |||||||||||||||    
T  24510942 tttaaaatccgaatagggtgtgtgaaaaactcatagggtggaaaaagtaacaatcta 24510886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 38308029 - 38308156
Alignment:
Q  55 cttttcccaccctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaac-ctccaaaacatgttgaa 153  Q
    ||||||||||||||| || |||| | ||||| |||||||||   ||||||||||||||||||||||||||||| ||||||||  || |||||| ||||||    
T  38308029 cttttcccaccctattaatttctcgtgtgtcttatgcagtttgaattatagaatccgaacggcataaacaccctataaaaactttcaaaaacacgttgaa 38308128  T
Q  154 acatttcagattttaaaatttgaatagg 181  Q
    |||||||||||||||||| | |||||||    
T  38308129 acatttcagattttaaaactagaatagg 38308156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 50 - 214
Target Start/End: Original strand, 13019597 - 13019762
Alignment:
Q  50 tgctacttttcccaccctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaa-catg 148  Q
    |||| |||||||||| ||||||||||||   | |||||||||||||  |||||||||||||||||||||||||||| ||||||||| || ||||| ||      
T  13019597 tgcttcttttcccactctatgaacttctcatgcgtcctatgcagtttggattatagaatccgaacggcataaacactccataaaaatcttcaaaatcaca 13019696  T
Q  149 ttgaaacatttcagattttaaaatttgaataggatgcgcgataaattcgtagggtgggaaaagtaa 214  Q
    ||||||| ||||||||||| ||||  ||| ||||  ||||| ||| || |||||||| ||||||||    
T  13019697 ttgaaacgtttcagattttcaaatccgaaaaggacacgcgagaaactcatagggtggaaaaagtaa 13019762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 85 - 214
Target Start/End: Complemental strand, 43050240 - 43050111
Alignment:
Q  85 cctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaataggatg 184  Q
    |||||||||||| ||||||||||||| |||| |||||| ||||  ||||||||||||||||| |||||||||||||||||||||||||  ||||| |  |    
T  43050240 cctatgcagttcggattatagaatccaaacgacataaataccctgtaaaaacctccaaaacacgttgaaacatttcagattttaaaatccgaataaggcg 43050141  T
Q  185 cgcgataaattcgtagggtgggaaaagtaa 214  Q
     || | ||| || |||||||||||||||||    
T  43050140 tgcaagaaactcatagggtgggaaaagtaa 43050111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 83 - 180
Target Start/End: Complemental strand, 775121 - 775024
Alignment:
Q  83 gtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaatag 180  Q
    |||||||  |||| ||||||||||||||||| || ||||| |||||||||||||||||||||| |||||||||||||  || |||||||| |||||||    
T  775121 gtcctataaagtttagattatagaatccgaatggaataaataccccataaaaacctccaaaacgtgttgaaacattttggaatttaaaatatgaatag 775024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 181
Target Start/End: Complemental strand, 22417355 - 22417270
Alignment:
Q  91 cagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaatagg 181  Q
    |||||| ||||||| ||||| |||||||||||||||| ||||||||||||||||||      |||||||| ||||||| ||||||||||||    
T  22417355 cagttcggattatataatccaaacggcataaacaccctataaaaacctccaaaaca-----caacatttcggattttagaatttgaatagg 22417270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 22442684 - 22442805
Alignment:
Q  92 agttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaataggatgcgcgata 191  Q
    ||||||||||||| | | | |||| ||||||||||||| |||||||||||||| | ||| | ||||||| ||||| |  ||| ||||||| ||| ||| |    
T  22442684 agttcagattatatatttcaaacgacataaacaccccacaaaaacctccaaaatacgttaagacatttctgatttgaggattcgaatagggtgcacgaca 22442783  T
Q  192 aattcgtagggtgggaaaagta 213  Q
    || || ||||||| ||||||||    
T  22442784 aactcatagggtgagaaaagta 22442805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 19943459 - 19943519
Alignment:
Q  74 ttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaa 134  Q
    |||| |||||||||||||||||  ||||||||||||| ||||||||||||| || ||||||    
T  19943459 ttctcgcgtgtcctatgcagtttggattatagaatccaaacggcataaacaacctataaaa 19943519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 179
Target Start/End: Complemental strand, 23046637 - 23046575
Alignment:
Q  117 cataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaata 179  Q
    ||||||||||||||||||| |||||||||   || |||||||||| |||||||||| ||||||    
T  23046637 cataaacaccccataaaaatctccaaaacgcattaaaacatttcaaattttaaaatctgaata 23046575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 168
Target Start/End: Complemental strand, 37267862 - 37267756
Alignment:
Q  62 caccctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttca 161  Q
    |||||||||| |||||| |  |||||||||| |||||||||||||||| |||| | ||||| | | ||||||| |  |||||||| ||| ||| |||||     
T  37267862 caccctatgagcttcttacacgtcctatgcatttcagattatagaatctgaactgtataaaaatctcataaaacctcccaaaacacgttaaaatatttcg 37267763  T
Q  162 gatttta 168  Q
    |||||||    
T  37267762 gatttta 37267756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 127 - 172
Target Start/End: Complemental strand, 19572652 - 19572607
Alignment:
Q  127 ccataaaaacctccaaaacatgttgaaacatttcagattttaaaat 172  Q
    |||||||||| ||||||||| ||| |||||||||||||||||||||    
T  19572652 ccataaaaacttccaaaacacgttaaaacatttcagattttaaaat 19572607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 56 - 108
Target Start/End: Complemental strand, 28245139 - 28245087
Alignment:
Q  56 ttttcccaccctatgaacttcttgcgtgtcctatgcagttcagattatagaat 108  Q
    |||| ||||| ||||||||||||||| || ||||||| |||||||||||||||    
T  28245139 tttttccaccttatgaacttcttgcgagttctatgcaattcagattatagaat 28245087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 202
Target Start/End: Original strand, 10696305 - 10696452
Alignment:
Q  55 cttttcccaccctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaa 154  Q
    |||||| ||||||||||  ||||   ||| |||||||||||  |||| |||||||| ||| ||||||| ||||| ||||| | || |||| | |||||||    
T  10696305 cttttcacaccctatgagtttctcatgtgccctatgcagtttggattttagaatccaaactgcataaaaaccccgtaaaaccttcaaaaatacgttgaaa 10696404  T
Q  155 catttcagattttaaaatttgaataggatgcgcgataaattcgtaggg 202  Q
     ||||  ||||||| |||| ||||||  ||||||| || ||| |||||    
T  10696405 tattttggattttagaattcgaatagagtgcgcgagaacttcataggg 10696452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 172
Target Start/End: Complemental strand, 5868012 - 5867943
Alignment:
Q  103 tagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaat 172  Q
    |||||||||||| |||||||  || ||||||| |  | |||||| ||||||| |||||||||||||||||    
T  5868012 tagaatccgaactgcataaaacccacataaaatctccaaaaacacgttgaaatatttcagattttaaaat 5867943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 28816184 - 28816233
Alignment:
Q  132 aaaacctccaaaacatgttgaaacatttcagattttaaaatttgaatagg 181  Q
    ||||||||||||||| ||||||| |||| | |||||| ||||||||||||    
T  28816184 aaaacctccaaaacacgttgaaatatttaaaattttataatttgaatagg 28816233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 3e-29; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 85 - 182
Target Start/End: Complemental strand, 9929422 - 9929325
Alignment:
Q  85 cctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaatagga 182  Q
    |||||||||||| ||||||||||| |||||| |||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| | |||||||    
T  9929422 cctatgcagttcggattatagaattcgaacgtcataaacacctcataaaaacctccaaaacacgttgaaagatttcagattttaaaatctaaatagga 9929325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 55 - 214
Target Start/End: Original strand, 29389115 - 29389274
Alignment:
Q  55 cttttcccaccctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacc-tccaaaacatgttgaa 153  Q
    |||||||||||||||||  |||| ||  ||||||| |||||| ||||||| ||||||||| |||||||||||| ||||||||| || |||||| ||||||    
T  29389115 cttttcccaccctatgagtttctcgcacgtcctatacagttcggattataaaatccgaacagcataaacacccaataaaaaccttcaaaaacacgttgaa 29389214  T
Q  154 acatttcagattttaaaatttgaataggatgcgcgataaattcgtagggtgggaaaagtaa 214  Q
    ||||||| ||||||||||| ||||||||  | |||| |||||  |||||||| ||||||||    
T  29389215 acatttcggattttaaaatctgaatagggcgtgcgagaaatt-atagggtggaaaaagtaa 29389274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 83 - 181
Target Start/End: Original strand, 31596511 - 31596610
Alignment:
Q  83 gtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctcc-aaaacatgttgaaacatttcagattttaaaatttgaatagg 181  Q
    ||||||| ||||| ||||| ||||||  ||||||||||||||||| |||||| ||||| |||||| |||||||||||||||||||||||||| |||||||    
T  31596511 gtcctatacagtttagattgtagaatttgaacggcataaacacccaataaaatcctccaaaaacacgttgaaacatttcagattttaaaattcgaatagg 31596610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 92 - 181
Target Start/End: Original strand, 18075514 - 18075603
Alignment:
Q  92 agttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaatagg 181  Q
    ||||| |||||||||||| |||||  |||||||||||||||||||| |||||| | ||| ||| ||||||||||||| ||||||||||||    
T  18075514 agttcggattatagaatctgaacgaaataaacaccccataaaaaccaccaaaagacgttaaaatatttcagattttataatttgaatagg 18075603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 56 - 179
Target Start/End: Original strand, 30525776 - 30525900
Alignment:
Q  56 ttttcccaccctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctcc-aaaacatgttgaaa 154  Q
    ||||| ||||||||||  |||| ||  | |||||||| ||  ||||||||||||||||||||||||||| | ||||||||||||| |||||| |||||||    
T  30525776 ttttcgcaccctatgagtttctcgcacgccctatgcaatttggattatagaatccgaacggcataaacatctcataaaaacctccaaaaacacgttgaaa 30525875  T
Q  155 catttcagattttaaaatttgaata 179  Q
    |||||| |||| || |||| |||||    
T  30525876 catttcggattctataattcgaata 30525900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 221
Target Start/End: Original strand, 29263777 - 29263932
Alignment:
Q  67 tatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaa-cctccaaaacatgttgaaacatttcagatt 165  Q
    ||||| |||||||| ||  |||||  ||| ||||||||||||| ||||| ||||||||||| ||||||| | || ||||||  |||||||||||  ||||    
T  29263777 tatgagcttcttgcatgctctatgtggtttagattatagaatctgaacgacataaacacccaataaaaatcttcaaaaacacattgaaacattttcgatt 29263876  T
Q  166 ttaaaatttgaataggatgcgcgataaattcgtagggtgggaaaagtaacaatcta 221  Q
    ||||||| |||||| || | |||| ||| ||||||  | | |||||||||| ||||    
T  29263877 ttaaaatctgaataagacgtgcgagaaactcgtagaatagaaaaagtaacactcta 29263932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 85 - 181
Target Start/End: Complemental strand, 989614 - 989518
Alignment:
Q  85 cctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaatagg 181  Q
    |||||| ||||| |||| |||||||||||| |||||||  |||||||||| |  | |||||| ||||||| ||||||||||||| | | ||||||||    
T  989614 cctatgtagttcggattttagaatccgaactgcataaaacccccataaaatctccaaaaacacgttgaaatatttcagattttagattctgaatagg 989518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 33192117 - 33192030
Alignment:
Q  87 tatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaa--catgttgaaacatttcagattttaaaat 172  Q
    |||||||||| ||||||| ||||||||||||||||||||  |||||||| || |||||   | ||||||| ||||| |||||||||||    
T  33192117 tatgcagttcggattataaaatccgaacggcataaacacttcataaaaatcttcaaaaattacgttgaaatatttcggattttaaaat 33192030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 87 - 169
Target Start/End: Complemental strand, 2396837 - 2396755
Alignment:
Q  87 tatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaa 169  Q
    ||||||||| |||||||||||| |||| | ||||||||||| |||||||||| ||||| | ||| ||| ||||  ||||||||    
T  2396837 tatgcagtttagattatagaattcgaatgacataaacaccctataaaaacctacaaaatacgttaaaatattttggattttaa 2396755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 167
Target Start/End: Original strand, 10242516 - 10242594
Alignment:
Q  89 tgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagatttt 167  Q
    |||| ||| |||| || |||||||| || |||||||| | ||||||| |||||||||| ||| ||||||||||||||||    
T  10242516 tgcacttcggattctataatccgaatgggataaacacacaataaaaatctccaaaacacgttaaaacatttcagatttt 10242594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 33240809 - 33240934
Alignment:
Q  55 cttttcccaccctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaa 154  Q
    ||||||||| ||||| | ||||| ||  | ||||| |||||  |||| |||||||||||| | ||||| ||||||||||||||| ||||| | |||||||    
T  33240809 cttttcccatcctataagcttctcgcacgccctatacagtttggattttagaatccgaactgtataaataccccataaaaaccttcaaaa-acgttgaaa 33240907  T
Q  155 catttcagattttaaaatttgaatagg 181  Q
     ||||| ||||||| |||  |||||||    
T  33240908 tatttcggattttagaatccgaatagg 33240934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 141 - 189
Target Start/End: Original strand, 13214204 - 13214252
Alignment:
Q  141 aaaacatgttgaaacatttcagattttaaaatttgaataggatgcgcga 189  Q
    |||||| ||||||| ||||| ||||||||||| ||||||||||||||||    
T  13214204 aaaacacgttgaaatatttcggattttaaaatctgaataggatgcgcga 13214252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 173
Target Start/End: Original strand, 13208730 - 13208804
Alignment:
Q  99 attatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatt 173  Q
    ||||||||||||||||  || ||||| ||  ||||||| | ||||||||||| |||| |||| ||||||||||||    
T  13208730 attatagaatccgaacaccagaaacaacctttaaaaacatacaaaacatgttaaaacttttcggattttaaaatt 13208804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 17131223 - 17131296
Alignment:
Q  55 cttttcccaccctatgaacttcttgcgtgtcctatg--cagttcagattatagaatccgaacggcataaacacc 126  Q
    ||||||||||||||||| ||||  | ||||||||||  || ||| |||||||||||  ||||||||||||||||    
T  17131223 cttttcccaccctatgagcttcacgtgtgtcctatgcacaattcggattatagaatttgaacggcataaacacc 17131296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 21974755 - 21974853
Alignment:
Q  74 ttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaat 172  Q
    |||||||| |||||||| ||||| |||| || ||||| ||||||||||| | |  |||||||| |  |||| ||||| ||| ||||| |||||||||||    
T  21974755 ttcttgcgcgtcctatgtagttcggattgtataatccaaacggcataaatatcttataaaaacttaaaaaatatgttaaaatatttcggattttaaaat 21974853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 34949103 - 34949029
Alignment:
Q  86 ctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttc 160  Q
    |||||||||| |||||||| ||| | || ||||||||||||| |||||| | |||||||||| || ||| |||||    
T  34949103 ctatgcagtttagattatataattcaaatggcataaacaccctataaaatcttccaaaacatattcaaatatttc 34949029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 6359128 - 6359071
Alignment:
Q  87 tatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaa 144  Q
    |||||||||||||||||||||| | || | ||| ||||| |||||||||| |||||||    
T  6359128 tatgcagttcagattatagaattcaaatgacattaacactccataaaaacatccaaaa 6359071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 214
Target Start/End: Complemental strand, 7591128 - 7591055
Alignment:
Q  141 aaaacatgttgaaacatttcagattttaaaatttgaataggatgcgcgataaattcgtagggtgggaaaagtaa 214  Q
    |||||| ||||||| ||||| ||||||| ||| | ||||||| |||||  |||||| |||| ||||||||||||    
T  7591128 aaaacacgttgaaatatttcggattttagaatcttaataggacgcgcgggaaattcataggatgggaaaagtaa 7591055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 215
Target Start/End: Original strand, 9540503 - 9540644
Alignment:
Q  74 ttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatt 173  Q
    ||||||||  |||||||||||| | |||||| |||  ||| | ||||||||||| |||||| ||| ||||| | | | | | ||||||||||||| |||     
T  9540503 ttcttgcgcttcctatgcagtttaaattataaaatttgaatgacataaacaccctataaaatccttcaaaaaacggtaagatatttcagattttagaatc 9540602  T
Q  174 tgaataggatgcgcgataaattcgtagggtgggaaaagtaac 215  Q
    ||||||||  ||| || ||| || |||| || ||||||||||    
T  9540603 tgaatagggcgcgtgagaaactcataggatgagaaaagtaac 9540644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 20207190 - 20207243
Alignment:
Q  129 ataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaatagga 182  Q
    |||||||| || |||||| ||||||| ||||||||||||| ||| |||||||||    
T  20207190 ataaaaacttcaaaaacacgttgaaatatttcagattttagaatctgaatagga 20207243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 129 - 182
Target Start/End: Original strand, 22101213 - 22101266
Alignment:
Q  129 ataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaatagga 182  Q
    |||||||| || |||||| ||||||| ||||||||||||| ||| |||||||||    
T  22101213 ataaaaacttcaaaaacacgttgaaatatttcagattttagaatctgaatagga 22101266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 5e-28; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 100 - 215
Target Start/End: Complemental strand, 37507649 - 37507534
Alignment:
Q  100 ttatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaataggatgcgcgataaattcgta 199  Q
    |||||||||| ||||| |||||| ||||||||||||||||||||||| ||||||||||||| ||||||| |||| |||||||  |||| | ||| || ||    
T  37507649 ttatagaatctgaacgacataaataccccataaaaacctccaaaacacgttgaaacatttcggattttagaattcgaatagggcgcgcaagaaactcata 37507550  T
Q  200 gggtgggaaaagtaac 215  Q
    ||||||||||||||||    
T  37507549 gggtgggaaaagtaac 37507534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 74 - 195
Target Start/End: Complemental strand, 39555995 - 39555875
Alignment:
Q  74 ttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatt 173  Q
    |||| |||||||||||||||||   |||||| ||||| |||  ||||||||||| ||||||| ||| |||||| |||||||||||||||||||||||||     
T  39555995 ttctcgcgtgtcctatgcagtttgaattatataatcc-aacaacataaacaccctataaaaatctcaaaaacacgttgaaacatttcagattttaaaatc 39555897  T
Q  174 tgaataggatgcgcgataaatt 195  Q
    |||| |||| |||||| |||||    
T  39555896 tgaacaggacgcgcgagaaatt 39555875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 94 - 181
Target Start/End: Complemental strand, 40899744 - 40899656
Alignment:
Q  94 ttcagattatagaatccgaacggcataaacaccccataaaaacc-tccaaaacatgttgaaacatttcagattttaaaatttgaatagg 181  Q
    ||||||||||| ||| |||| ||||||||||||||||||||||| || |||||| ||| ||| ||||||||||||||||| ||||||||    
T  40899744 ttcagattataaaattcgaaaggcataaacaccccataaaaaccttcaaaaacacgttaaaatatttcagattttaaaatctgaatagg 40899656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 189
Target Start/End: Complemental strand, 7685555 - 7685453
Alignment:
Q  86 ctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaataggatgc 185  Q
    |||||||||||||||| || ||||||||| ||||||| || |||||||| | | ||||| | ||||||| ||||||||||||||||||| |||||||||     
T  7685555 ctatgcagttcagattttataatccgaaccgcataaaaactccataaaa-ctttcaaaatacgttgaaatatttcagattttaaaatttaaataggatgt 7685457  T
Q  186 gcga 189  Q
    ||||    
T  7685456 gcga 7685453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 83 - 179
Target Start/End: Complemental strand, 37325212 - 37325116
Alignment:
Q  83 gtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaata 179  Q
    |||||||||| || |||||||||||| | || | |||||||| ||||| ||||||||||||||| ||| |||||||||  |||||||||||| ||||    
T  37325212 gtcctatgcaatttagattatagaattcaaatgacataaacatcccattaaaacctccaaaacacgttaaaacatttcgaattttaaaatttaaata 37325116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 7632768 - 7632687
Alignment:
Q  99 attatagaatccgaacggcataaacaccccataaaaacc-tccaaaacatgttgaaacatttcagattttaaaatttgaata 179  Q
    ||||||||||| ||||| ||||||||||| ||||||||| || |||| | ||||||| |||||| |||||||||||||||||    
T  7632768 attatagaatctgaacgacataaacacccgataaaaaccttcaaaaatacgttgaaatatttcaaattttaaaatttgaata 7632687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 172
Target Start/End: Complemental strand, 13818869 - 13818783
Alignment:
Q  86 ctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaat 172  Q
    ||||| ||||| ||||||||||||| |||  ||||||||||||||| ||||| |||||||| ||||||| ||||   ||||||||||    
T  13818869 ctatgtagttcggattatagaatccaaacttcataaacaccccatataaaccaccaaaacacgttgaaatattttgaattttaaaat 13818783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 85 - 214
Target Start/End: Original strand, 27157657 - 27157786
Alignment:
Q  85 cctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaa-catgttgaaacatttcagattttaaaatttgaataggat 183  Q
    |||||||| ||| |||||||||||||||| |||||||| ||||||| |||| |||||||| || ||||||| | ||| ||||||| |||  |||||| |     
T  27157657 cctatgcatttcggattatagaatccgaatggcataaataccccat-aaaatctccaaaaccacgttgaaataattcggattttagaatccgaatagcac 27157755  T
Q  184 gcgcgataaattcgtagggtgggaaaagtaa 214  Q
    || ||| ||| || |||||||| ||||||||    
T  27157756 gcacgagaaactcatagggtggaaaaagtaa 27157786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 129 - 182
Target Start/End: Complemental strand, 26462418 - 26462365
Alignment:
Q  129 ataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaatagga 182  Q
    |||||||| | ||||||| ||||||||||||||||||||| |||||||||||||    
T  26462418 ataaaaactttcaaaacacgttgaaacatttcagattttataatttgaatagga 26462365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 4656562 - 4656662
Alignment:
Q  86 ctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacc-tccaaaacatgttgaaacatttcagattttaaaatttgaataggatg 184  Q
    ||||||||||  |||||||||||||||||| |||||| ||  |||||||||| |  ||||||  || |||||||||||||| |||||| || ||| ||||    
T  4656562 ctatgcagtttggattatagaatccgaacgacataaatacatcataaaaacctttaaaaacacattaaaacatttcagattctaaaatctggataagatg 4656661  T
Q  185 c 185  Q
    |    
T  4656662 c 4656662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 168
Target Start/End: Original strand, 31078765 - 31078850
Alignment:
Q  83 gtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagatttta 168  Q
    |||||||||| ||  ||| || ||||| |||||||||||| |  |||||||||  ||||||||| ||| |||||||||| ||||||    
T  31078765 gtcctatgcaatttggataatcgaatctgaacggcataaatattccataaaaatttccaaaacacgttaaaacatttcaaatttta 31078850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 146
Target Start/End: Complemental strand, 41530411 - 41530358
Alignment:
Q  93 gttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaaca 146  Q
    |||||||||||| || ||||||  |||||||||| ||||||||| |||||||||    
T  41530411 gttcagattatacaacccgaacaacataaacaccacataaaaacttccaaaaca 41530358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 87 - 220
Target Start/End: Original strand, 44 - 177
Alignment:
Q  87 tatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaataggatgcg 186  Q
    ||||||||||  |||||||||||| |||||||||||||||||||||||||||| |||||| ||| ||| ||||||||||||||| ||| |||| | || |    
T  44 tatgcagttcgaattatagaatccaaacggcataaacaccccataaaaacctctaaaacacgtttaaatatttcagattttaaattttaaataaggtgtg 143  T
Q  187 cgataaattcgtagggtgggaaaagtaacaatct 220  Q
    ||| ||| || |||||||  |||| |||||||||    
T  144 cgaaaaactcatagggtgaaaaaaataacaatct 177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 65 - 181
Target Start/End: Original strand, 17339688 - 17339804
Alignment:
Q  65 cctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagat 164  Q
    |||||||| |||||| ||||||||||||||||||||||||||| |||||||  |||||| | | ||||||||||||||||||  || ||| |||||||||    
T  17339688 cctatgaatttcttgtgtgtcctatgcagttcagattatagaacccgaacgaaataaactctctataaaaacctccaaaacacatttaaatatttcagat 17339787  T
Q  165 tttaaaatttgaatagg 181  Q
    |||| ||| ||||||||    
T  17339788 tttagaatctgaatagg 17339804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 56 - 181
Target Start/End: Original strand, 37865414 - 37865540
Alignment:
Q  56 ttttcccaccctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctcc-aaaacatgttgaaa 154  Q
    |||| ||||||||||| |||||||| |  |||||||||||| |||||||||||| ||||| ||||||||||||   ||||||||| |||||| | ||| |    
T  37865414 tttttccaccctatgagcttcttgcttaccctatgcagttcggattatagaatctgaacgacataaacacccccataaaacctccaaaaacacgctgaga 37865513  T
Q  155 catttcagattttaaaatttgaatagg 181  Q
    ||||||| ||||||||||  |||||||    
T  37865514 catttcaaattttaaaatccgaatagg 37865540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 2749181 - 2749251
Alignment:
Q  98 gattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagatttta 168  Q
    |||||||||||||||||  ||||||  |||||||||||||||||||||| ||||||||||||| |||||||    
T  2749181 gattatagaatccgaacaccataaatgccccataaaaacctccaaaacaagttgaaacatttcggatttta 2749251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 85 - 214
Target Start/End: Complemental strand, 46940075 - 46939945
Alignment:
Q  85 cctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaa-catgttgaaacatttcagattttaaaatttgaataggat 183  Q
    ||||| |||||| |||||||||||||||||  ||||||||  | ||||| |||| ||||| ||| |||||||||||||||||||| |||| |||||||||    
T  46940075 cctatacagttcggattatagaatccgaacaacataaacaatctataaagaccttcaaaaacatattgaaacatttcagattttagaattcgaataggat 46939976  T
Q  184 gcgcgataaattcgtagggtgggaaaagtaa 214  Q
     | | | |||||| ||||||| |||| ||||    
T  46939975 ccacaagaaattcatagggtgagaaaggtaa 46939945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 31767888 - 31767980
Alignment:
Q  80 cgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaat 172  Q
    |||||||||||||||||||||| ||||||||| || ||||||| ||| |||||||   || |||||| ||||||| ||||| |||||||||||    
T  31767888 cgtgtcctatgcagttcagattttagaatccgcactgcataaaaacctcataaaactttcaaaaacacgttgaaatatttcggattttaaaat 31767980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 48401012 - 48400943
Alignment:
Q  113 acggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaatagga 182  Q
    ||||||||||||||| |||||||||||||||||| ||| ||||||||| ||||||| |||  ||||||||    
T  48401012 acggcataaacaccctataaaaacctccaaaacacgttaaaacatttcggattttagaatccgaatagga 48400943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 179
Target Start/End: Original strand, 51474000 - 51474086
Alignment:
Q  92 agttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaata 179  Q
    ||||| |||||||||||||||| | | |||||||||||| |||||  |||||| | ||| ||||||||||||||||| ||||||||||    
T  51474000 agttcggattatagaatccgaatgacgtaaacaccccat-aaaacgaccaaaagacgttaaaacatttcagattttataatttgaata 51474086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 144
Target Start/End: Original strand, 18639008 - 18639067
Alignment:
Q  85 cctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaa 144  Q
    |||||||||||||||||||| |||  ||||||||||| ||||||||||||| || |||||    
T  18639008 cctatgcagttcagattataaaatttgaacggcataagcaccccataaaaatctacaaaa 18639067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 182
Target Start/End: Original strand, 32556488 - 32556577
Alignment:
Q  93 gttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaatagga 182  Q
    |||| ||||||| ||||| ||||| ||||  ||| ||||||||||||||||| | |||  || |||||||||||||||||  ||||||||    
T  32556488 gttcggattatataatccaaacggtataattacctcataaaaacctccaaaatacgttacaatatttcagattttaaaatccgaatagga 32556577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 7439095 - 7439183
Alignment:
Q  126 cccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaataggatgcgcgataaattcgtagggtgggaaaagtaa 214  Q
    ||||||||| | || |||||| ||||||| |||| |||||||| ||||||||||||| |||||| ||  || |||| || |||||||||    
T  7439095 cccataaaaccttcaaaaacacgttgaaatattttagattttagaatttgaataggacgcgcgagaatctcataggatgagaaaagtaa 7439183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 101 - 179
Target Start/End: Complemental strand, 23404988 - 23404910
Alignment:
Q  101 tatagaatccgaacggcataaacaccccataaaaacctccaaaa-catgttgaaacatttcagattttaaaatttgaata 179  Q
    |||||||| | ||||||||||| ||||||||||  | ||||||| ||||||||||| |||| |||||||||||| |||||    
T  23404988 tatagaattcaaacggcataaaaaccccataaat-cttccaaaaacatgttgaaacgtttcggattttaaaattcgaata 23404910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 144
Target Start/End: Original strand, 30527649 - 30527746
Alignment:
Q  46 agactgctacttttcccaccctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaa 144  Q
    |||||| | ||||||||| ||||||   ||||  || ||||||||||| |  |||| |||||||||||||||||||| | ||||| |||||||||||||    
T  30527649 agactgtttcttttcccatcctatgtgtttctcacgcgtcctatgcagattggattttagaatccgaacggcataaaaaacccat-aaaacctccaaaa 30527746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 168
Target Start/End: Original strand, 434943 - 435027
Alignment:
Q  83 gtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagatttta 168  Q
    |||||||||||||  |||| |||||||||| | |||| || ||| | ||||||| || |||||||||||||| |||| ||||||||    
T  434943 gtcctatgcagttg-gattttagaatccgagctgcatgaaaacctcgtaaaaacttcaaaaacatgttgaaatattttagatttta 435027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 180
Target Start/End: Complemental strand, 14874500 - 14874407
Alignment:
Q  87 tatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaatag 180  Q
    |||||||||| ||||||| | | | |||  ||||| || ||||||||||| | || |||||||| ||||||||||||||||  ||| |||||||    
T  14874500 tatgcagttcggattatatagttcaaacaacataatcatcccataaaaacattcagaacatgttaaaacatttcagattttcgaatctgaatag 14874407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 122
Target Start/End: Original strand, 35814467 - 35814543
Alignment:
Q  46 agactgctacttttcccaccctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaa 122  Q
    |||||||| ||||| | |||||||||  |||| ||| ||||||||||||||||||| || |||| || || ||||||    
T  35814467 agactgcttctttttctaccctatgagtttctcgcgcgtcctatgcagttcagattttataatctgatcgacataaa 35814543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 87 - 210
Target Start/End: Original strand, 41945199 - 41945321
Alignment:
Q  87 tatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaataggatgcg 186  Q
    |||||||||| ||||||| |||||||||| ||||||||||| |||||||||| ||||||||||| ||||||||||||||||| ||||  ||||||  |||    
T  41945199 tatgcagttcggattatataatccgaacgacataaacaccc-ataaaaaccttcaaaacatgttaaaacatttcagattttagaattcaaatagggcgcg 41945297  T
Q  187 cgataaattcgtagggtgggaaaa 210  Q
    | | ||| || |||||||| ||||    
T  41945298 caagaaagtcatagggtggaaaaa 41945321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 39791314 - 39791231
Alignment:
Q  99 attatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaatagga 182  Q
    ||||||||||||||||||||||||||||||||||||| || ||||||| ||||||| ||||| ||||||| ||||  |||||||    
T  39791314 attatagaatccgaacggcataaacaccccataaaaatcttcaaaacacgttgaaatatttcggattttagaattcaaatagga 39791231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 55 - 214
Target Start/End: Original strand, 26988899 - 26989059
Alignment:
Q  55 cttttcccaccctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacgg-cataaacaccccataaaaacctccaaaacatgttgaa 153  Q
    |||||||||||||||  | |||| ||| | ||| |||||||  || |||||||||||||||| |||| ||||||||||||||||| ||||||| ||| ||    
T  26988899 cttttcccaccctattgatttctcgcgcgccctgtgcagtttggactatagaatccgaacgggcatatacaccccataaaaaccttcaaaacacgttaaa 26988998  T
Q  154 acatttcagattttaaaatttgaataggatgcgcgataaattcgtagggtgggaaaagtaa 214  Q
    ||||||| ||||||| ||| |  |||||   ||| | ||| || |||||||||||||||||    
T  26988999 acatttcggattttagaatctagatagggcacgcaagaaactcatagggtgggaaaagtaa 26989059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 178
Target Start/End: Original strand, 9689443 - 9689535
Alignment:
Q  86 ctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaat 178  Q
    ||||| |||| |||||||| ||||||||||| ||||||||| ||||| || ||| |||||| ||| ||| |||||||||||||||||| ||||    
T  9689443 ctatgtagtttagattatataatccgaacggtataaacacctcataagaatctctaaaacaagttaaaatatttcagattttaaaattcgaat 9689535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 56 - 170
Target Start/End: Complemental strand, 8938942 - 8938827
Alignment:
Q  56 ttttcccaccctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctcc-aaaacatgttgaaa 154  Q
    ||||| || ||||| || || ||||| ||| |||||||||| |||| |||| ||| |||||| |||||| ||||||||||| ||| ||||||||||| ||    
T  8938942 ttttctcatcctataaattttttgcgcgtcttatgcagttcggattgtagagtccaaacggcgtaaacatcccataaaaacatccaaaaacatgttgtaa 8938843  T
Q  155 catttcagattttaaa 170  Q
    ||||| ||||||||||    
T  8938842 cattttagattttaaa 8938827  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 168
Target Start/End: Original strand, 7257554 - 7257636
Alignment:
Q  86 ctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagatttta 168  Q
    ||||| ||||| ||||||||||||| |||| |||||   |||||  ||||||||||||||| || |||||||||| |||||||    
T  7257554 ctatgtagttcggattatagaatccaaacgacataatacccccaataaaacctccaaaacacgtcgaaacatttcggatttta 7257636  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 189
Target Start/End: Complemental strand, 12311923 - 12311825
Alignment:
Q  92 agttcagattatagaatccgaacggcataaacaccccataaaaacctc-caaaacatgttgaaacatttcagattttaaaatttgaataggatgcgcga 189  Q
    ||||| ||||||||||||||||||| ||||||||| |||||||| |||  |||| ||||| ||| | ||||||| ||||||| | |||| || ||||||    
T  12311923 agttcggattatagaatccgaacggaataaacacctcataaaaatctctaaaaatatgttaaaataattcagatgttaaaatctaaataagacgcgcga 12311825  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 37211135 - 37211081
Alignment:
Q  91 cagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaac 145  Q
    |||||||||||||||||| ||||||  |||||||||| |||||||||| ||||||    
T  37211135 cagttcagattatagaattcgaacgctataaacaccctataaaaaccttcaaaac 37211081  T

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Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 39927461 - 39927559
Alignment:
Q  74 ttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaat 172  Q
    |||||||||  |||||| | ||| ||||||| ||||||||  | |||| |||| ||||||| | || |||||| ||||||||||||| |||||||||||    
T  39927461 ttcttgcgtaccctatgtaattctgattataaaatccgaatagtataaccacctcataaaaccttcaaaaacacgttgaaacatttcggattttaaaat 39927559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 210
Target Start/End: Original strand, 9603867 - 9603959
Alignment:
Q  118 ataaacaccccataaaaacctcc-aaaacatgttgaaacatttcagattttaaaatttgaataggatgcgcgataaattcgtagggtgggaaaa 210  Q
    ||||| ||||||| ||||||||| |||| | ||| ||| ||||||||||||| ||||||||||||| |||||| ||  || |||||||||||||    
T  9603867 ataaaaaccccat-aaaacctccaaaaatacgttaaaatatttcagattttagaatttgaataggacgcgcgagaaggtcatagggtgggaaaa 9603959  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 86 - 135
Target Start/End: Original strand, 24234013 - 24234062
Alignment:
Q  86 ctatgcagttcagattatagaatccgaacggcataaacaccccataaaaa 135  Q
    ||||||||||||||||||| |||||||||| |||||| ||| ||||||||    
T  24234013 ctatgcagttcagattatataatccgaacgacataaatacctcataaaaa 24234062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 135
Target Start/End: Complemental strand, 53689120 - 53689083
Alignment:
Q  98 gattatagaatccgaacggcataaacaccccataaaaa 135  Q
    |||||||||||| ||||| |||||||||||||||||||    
T  53689120 gattatagaatctgaacgacataaacaccccataaaaa 53689083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 38303380 - 38303296
Alignment:
Q  86 ctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaa-catgttgaaacatttcagattttaa 169  Q
    ||||| ||||| ||||||||||| | ||||||||||| |    |||||||||||||||| |   |||||||||||||||||||||    
T  38303380 ctatgaagttcggattatagaatacaaacggcataaatattgtataaaaacctccaaaaacgcattgaaacatttcagattttaa 38303296  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 85 - 215
Target Start/End: Original strand, 35356355 - 35356484
Alignment:
Q  85 cctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaataggatg 184  Q
    |||||||||||| ||||||| |||||||||| | |||| ||||||||||||||||||||||| ||| ||||||||| ||||||| ||||  ||||||| |    
T  35356355 cctatgcagttcggattatataatccgaacgacgtaaa-accccataaaaacctccaaaacacgttaaaacatttcggattttagaattcaaataggacg 35356453  T
Q  185 cgcgataaattcgtagggtgggaaaagtaac 215  Q
    | ||| ||| ||  ||| || ||||||||||    
T  35356454 cacgagaaactcaaaggatgagaaaagtaac 35356484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 83 - 173
Target Start/End: Original strand, 35424864 - 35424954
Alignment:
Q  83 gtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatt 173  Q
    |||||||| ||||  |||||||||||| |||||||||||||| | ||||||||||||||||| ||||| ||| ||||||||||||| ||||    
T  35424864 gtcctatgtagtttggattatagaatctgaacggcataaacatcgcataaaaacctccaaaatatgttaaaatatttcagattttagaatt 35424954  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 92 - 173
Target Start/End: Original strand, 22713411 - 22713493
Alignment:
Q  92 agttcagattatagaatccgaacggcataaacaccccataaaaacctcc-aaaacatgttgaaacatttcagattttaaaatt 173  Q
    |||| |||||||| |||||||| |||||||||||||  ||||||||||| |||||| ||||||| ||||||||||||||||||    
T  22713411 agtttagattataaaatccgaatggcataaacaccctgtaaaaacctccaaaaacacgttgaaatatttcagattttaaaatt 22713493  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 86 - 168
Target Start/End: Original strand, 3255112 - 3255195
Alignment:
Q  86 ctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacc-tccaaaacatgttgaaacatttcagatttta 168  Q
    ||||||||||| ||||||| |||| ||||||||||||||||||||||||||| || |||| || |||||| |||| ||||||||    
T  3255112 ctatgcagttcggattatataatcagaacggcataaacaccccataaaaaccttcaaaaatatattgaaatattttagatttta 3255195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 179
Target Start/End: Complemental strand, 4451933 - 4451853
Alignment:
Q  99 attatagaatccgaacggcataaacaccccataaaaacctccaaaacatgttgaaacatttcagattttaaaatttgaata 179  Q
    |||||| |||| ||||| |||||| | ||||||||||| || |||||||||| |||||||||| |||||||||| ||||||    
T  4451933 attatataatctgaacgacataaataacccataaaaacttcaaaaacatgttaaaacatttcaaattttaaaatctgaata 4451853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 172
Target Start/End: Complemental strand, 17115997 - 17115923
Alignment:
Q  99 attatagaatccgaacggcataaacaccccataaaaac-ctccaaaacatgttgaaacatttcagattttaaaat 172  Q
    |||||||||| |||||| ||||||||||||||||||||  || |||||| ||||||| |||| ||||||||||||    
T  17115997 attatagaattcgaacgacataaacaccccataaaaactttcaaaaacacgttgaaatattttagattttaaaat 17115923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 40172455 - 40172543
Alignment:
Q  56 ttttcccaccctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctccaaaa 144  Q
    ||||| |||||| |||  |||| || ||||||||||| ||| |||||||||||  ||||  ||||||||||| ||||||||||||||||    
T  40172455 ttttctcaccctgtgagtttctcgcatgtcctatgcaattcggattatagaatttgaacaacataaacacccaataaaaacctccaaaa 40172543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 122
Target Start/End: Original strand, 26971331 - 26971397
Alignment:
Q  56 ttttcccaccctatgaacttcttgcgtgtcctatgcagttcagattatagaatccgaacggcataaa 122  Q
    ||||| ||||||||||  ||||  |||||||||||||||||||||| || ||||||||| |||||||    
T  26971331 ttttctcaccctatgagtttctcacgtgtcctatgcagttcagattttaaaatccgaactgcataaa 26971397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 127
Target Start/End: Complemental strand, 17298493 - 17298449
Alignment:
Q  83 gtcctatgcagttcagattatagaatccgaacggcataaacaccc 127  Q
    |||||||| | ||||||||||||||||| ||||||||||||||||    
T  17298493 gtcctatgtaattcagattatagaatccaaacggcataaacaccc 17298449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 36645842 - 36645882
Alignment:
Q  85 cctatgcagttcagattatagaatccgaacggcataaacac 125  Q
    ||||||||||||| ||||||||||||||| | |||||||||    
T  36645842 cctatgcagttcaaattatagaatccgaatgacataaacac 36645882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 6532 - 6446
Alignment:
Q  87 tatgcagttcagattatagaatccgaacggcataaacaccccataaaaacctc-caaaacatgttgaaacatttcagattttaaaat 172  Q
    |||||||||| |||||||||||||||||| ||||||| || ||||||||||||  |||| | ||||||||||||  |||| ||||||    
T  6532 tatgcagttcggattatagaatccgaacgacataaacccctcataaaaacctctaaaaatacgttgaaacattttggattctaaaat 6446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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