View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_high_44 (Length: 261)
Name: NF11575_high_44
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_high_44 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 22139593 - 22139354
Alignment:
| Q |
13 |
atcgatcatagtaagtaatctttatgataaaagtataaagtttacaagataattcgaagctaaatatctc-ttagttgaaaagcttaattcttctagtta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
22139593 |
atcgatcatagtaagtaatctttatgataaaagtataaagtttacaagataattcgaagctaaatatctccttagttgaaaagcttaattcttctagtta |
22139494 |
T |
|
| Q |
112 |
taagcttgctagtcatatgtacttgactcagacaaaagcttctatattttataatcactttaacagaacataatgcatttttatgatttagaggattgtg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22139493 |
taagcttgctagtcatatgtacttgactcagacaaaagcttctatattttataatcactttaacagaacataatgcatttttatgatttagaggattgtg |
22139394 |
T |
|
| Q |
212 |
tgtttaaaaatattgtagttaactatatttttctcctatg |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
22139393 |
tgtttaaaaatattgtagttaactatatttttctcctatg |
22139354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 21965675 - 21965438
Alignment:
| Q |
12 |
tatcgatcatagtaagtaatctttatgataaaagtataaagtttacaagataattcgaagctaaatatctcttagttgaaaagcttaattcttctagtta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||| ||||| |
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| T |
21965675 |
tatcgatcatagtaagtaatctttatgataaaagtataaagtttacaagataattcgaagctaa-tctc-cttagttgaaaagcttaattcttcaagtta |
21965578 |
T |
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| Q |
112 |
taagcttgctagtcatatgtacttgactcagacaaaagcttctatattttataatcactttaacagaacataatgcatttttatgatttagaggattgtg |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21965577 |
taagcttgctagtcatatgtacttgactcagacaaaagcttctatattttataatcactttaacagaacataatgcatttttatgatttagaggattgtg |
21965478 |
T |
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| Q |
212 |
tgtttaaaaatattgtagttaactatatttttctcctatg |
251 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
21965477 |
tgtttaaaaatattgtagttaactatatttttctcctatg |
21965438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 12 - 251
Target Start/End: Complemental strand, 21988111 - 21987874
Alignment:
| Q |
12 |
tatcgatcatagtaagtaatctttatgataaaagtataaagtttacaagataattcgaagctaaatatctcttagttgaaaagcttaattcttctagtta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||| ||||| |
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| T |
21988111 |
tatcgatcatagtaagtaatctttatgataaaagtataaagtttacaagataattcgaagctaa-tctc-cttagttgaaaagcttaattcttcaagtta |
21988014 |
T |
|
| Q |
112 |
taagcttgctagtcatatgtacttgactcagacaaaagcttctatattttataatcactttaacagaacataatgcatttttatgatttagaggattgtg |
211 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21988013 |
taagcttgctagtcatatgtacttgactcagacaaaagcttctatattttataatcactttaacagaacataatgcatttttatgatttagaggattgtg |
21987914 |
T |
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| Q |
212 |
tgtttaaaaatattgtagttaactatatttttctcctatg |
251 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21987913 |
tgtttaaaaatattgtagttaactatatttttctcctatg |
21987874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 18940913 - 18941147
Alignment:
| Q |
12 |
tatcgatcatagtaagtaatctttatgataaaagtataaagtttacaagataattcgaagctaaatatctcttagttgaaaagcttaattcttctagtta |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||| |
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| T |
18940913 |
tatcgatcatagtaagtaatctttatgataaaagtataaagtttacaagataattcgaagctaa-tctc-cttagttgaaaagcttaattcttctagtta |
18941010 |
T |
|
| Q |
112 |
taagcttgctagtcatatgtacttgactcagacaaaagcttctatattttataatcac-tttaacagaacataatgcatttttatgatttagaggattgt |
210 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| ||||| || |
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| T |
18941011 |
taagcttgctagtcatatgtacttgactcggacaaaagcttctatattttataatcacttttaacag---ataatgcatttttatgattta-aggatagt |
18941106 |
T |
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| Q |
211 |
gtgtttaaaaatattgtagttaactatatttttctcctatg |
251 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||| |
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| T |
18941107 |
gtgtttaaaaatattgtagttaactatttttttctcctatg |
18941147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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