View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_high_46 (Length: 257)
Name: NF11575_high_46
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_high_46 |
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Alignment Details
Target: chr2 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 10935734 - 10935978
Alignment:
| Q |
1 |
tttgtggaataagaatttggtatcttgaagagatagatgtagctgatccacttaatgtgataatatttggttgatattgttattatttatttccgtttgt |
100 |
Q |
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| T |
10935734 |
tttgtggaataagaatttggtatcttgaagagatagatgtagctgatccacttaatgtgataatgtttggttgatattgttattatttatctccgtgtgt |
10935833 |
T |
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| Q |
101 |
ttgtcttggagggtgccatttattgttctgttatggcaaaagaaatttcactattccagttcgagtttactcattttctgatttaattttgttacatact |
200 |
Q |
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| T |
10935834 |
ttgtcttggagggtgccatttattgttctgttatggcaaaagaaatttcactattccagttcaagtttactcattttctgatttaattttgttacatact |
10935933 |
T |
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| Q |
201 |
gggtttgataatgattttcaggttctctacagtgtttgatgatga |
245 |
Q |
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| T |
10935934 |
gggtttgataatgattttcaggttctctacagtgtttgattatga |
10935978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 237
Target Start/End: Original strand, 10960880 - 10961117
Alignment:
| Q |
10 |
taagaatttggtatcttgaagagatagatgtagctgatccacttaatgtgataat-atttggtt-gatattgttattatttatttccgtttgtttgtctt |
107 |
Q |
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| T |
10960880 |
taagattttggtattttgaagagagagatgtagctgatccactcaatgagataaggatatgttttgttattgtaattatttatttccatttgtttgtttt |
10960979 |
T |
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| Q |
108 |
ggagggtgccatttattg------------ttctgttatggcaaaagaaatttcactattccagttcgagtttactcattttctgatttaattttgttac |
195 |
Q |
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| T |
10960980 |
ggagggtgccctttattgtacttgtaccttttctgttatgccgaaataacttacactattccagat---gtttactcctttt-ttatttaattttgtaac |
10961075 |
T |
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| Q |
196 |
atactgggtttgataatgattttcaggttctctacagtgttt |
237 |
Q |
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| T |
10961076 |
ttactggtttcaataataattttcaggttctctacagtgttt |
10961117 |
T |
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