View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_high_50 (Length: 242)
Name: NF11575_high_50
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_high_50 |
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Alignment Details
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 30077247 - 30077337
Alignment:
| Q |
1 |
caagtcacacatctagatttccaaatttacatgactgtggcaaataatttatccaaataaacacaatggagttaaccttcaatggtttact |
91 |
Q |
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| T |
30077247 |
caagtcacacatctagatttccaaatttacatgactgtggcaaataatttatccaaataaacacaatagagttaaccttcaatggtttact |
30077337 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 226
Target Start/End: Original strand, 41957624 - 41957654
Alignment:
| Q |
196 |
gaccaatgaaaagtgagaaaaaagaaattat |
226 |
Q |
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| T |
41957624 |
gaccaatgaaaagtgagaaaaaagaaattat |
41957654 |
T |
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