View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11575_high_54 (Length: 239)
Name: NF11575_high_54
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_high_54 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 42113306 - 42113246
Alignment:
| Q |
57 |
gtagtatctacataaatcattgataattaagattaccccacaaaaagatgttggatggtgg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42113306 |
gtagtatctacataaatcattgataattaagattaccacacaaaaagatgttggatggtgg |
42113246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 42113149 - 42113104
Alignment:
| Q |
194 |
agagagagtgaggttaagcatgggagatgaataagaaagttgttat |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42113149 |
agagagagtgaggttaagcatgggagatgaataagaaagttgttat |
42113104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University