View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11575_high_6 (Length: 568)

Name: NF11575_high_6
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11575_high_6
NF11575_high_6
[»] chr1 (9 HSPs)
chr1 (296-543)||(13878761-13879008)
chr1 (162-301)||(13878601-13878736)
chr1 (18-138)||(13878478-13878601)
chr1 (35-92)||(19071410-19071467)
chr1 (35-92)||(19119300-19119357)
chr1 (181-255)||(19071231-19071306)
chr1 (181-255)||(19119121-19119196)
chr1 (479-543)||(5800329-5800393)
chr1 (480-543)||(16129850-16129913)
[»] scaffold0068 (2 HSPs)
scaffold0068 (181-255)||(58771-58846)
scaffold0068 (35-92)||(58953-59015)
[»] chr6 (2 HSPs)
chr6 (181-246)||(21803094-21803160)
chr6 (35-92)||(21802924-21802987)
[»] chr3 (3 HSPs)
chr3 (468-527)||(26848040-26848100)
chr3 (471-526)||(50834261-50834316)
chr3 (471-526)||(50841537-50841592)
[»] chr4 (1 HSPs)
chr4 (478-527)||(36187572-36187622)
[»] scaffold0008 (1 HSPs)
scaffold0008 (479-543)||(258216-258280)
[»] chr2 (1 HSPs)
chr2 (479-543)||(19926678-19926742)
[»] chr8 (1 HSPs)
chr8 (480-527)||(13882337-13882385)


Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-125; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 296 - 543
Target Start/End: Original strand, 13878761 - 13879008
Alignment:
Q  296 caacaaaaaatatttaaagaagaacacaaatactcaacattgaataaagttaccagaaattaggtatcgactcgataaatttgttacgctcatcatcata 395  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  13878761 caacaaaaaatatttaaagaagaacataaatactcaacattgaataaagttaccagaaattaggtatcgactcgataaatttgttacgcccatcatcata 13878860  T
Q  396 ttgtaatttcaataactcattggctcttcttcccgaatttacggctacgctcctcagttagctaaaatcataaaatcatattaaatactccctcgagtct 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13878861 ttgtaatttcaataactcattggctcttcttcccgaatttacggctacactcctcagttagctaaaatcataaaatcatattaaatactccctcgagtct 13878960  T
Q  496 tttatacaagaaacaaaaccataaaacatcaaaaaccaaggaaataca 543  Q
    |||||||||||||||||| ||||||||||| |||||||||||||||||    
T  13878961 tttatacaagaaacaaaaacataaaacatcgaaaaccaaggaaataca 13879008  T

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Target: chr1; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 162 - 301
Target Start/End: Original strand, 13878601 - 13878736
Alignment:
Q  162 attatttcagaaacaaattaattaatcctcctctctcggtgttgatcttttcaaagggatcgtttttcccttatctctcggtaccgacgtttcagacttt 261  Q
    |||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  13878601 attatttcagaaacaaatt----aatcctcctctctcggtgttgatcttttcaaagggatcgtttttcccttatctctcggtaccgacctttcagacttt 13878696  T
Q  262 caggaattgtagttttaaataagcaatatattcacaacaa 301  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13878697 caggaattgtagttttaaataagcaatatattcacaacaa 13878736  T

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Target: chr1; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 138
Target Start/End: Original strand, 13878478 - 13878601
Alignment:
Q  18 ccaagatcgttgaacacatttaaaacgcataagtgactttgcaggcaatctaactaatatctctgcctccaaatctacccctagaattccactcattatc 117  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  13878478 ccaagatctttgaacacatttaaaacgcataagtgactttgcaggcaatctaactaatatctctgcctccaaatctccccctagaattccactcattatc 13878577  T
Q  118 t---ttcttctgcacagagaaaca 138  Q
    |   ||||||||||||||||||||    
T  13878578 tttcttcttctgcacagagaaaca 13878601  T

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Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 19071467 - 19071410
Alignment:
Q  35 atttaaaacgcataagtgactttgcaggcaatctaactaatatctctgcctccaaatc 92  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19071467 atttaaaacgcataagtgactttgcaggaaatctaactaatatctctgcctccaaatc 19071410  T

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Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 19119357 - 19119300
Alignment:
Q  35 atttaaaacgcataagtgactttgcaggcaatctaactaatatctctgcctccaaatc 92  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  19119357 atttaaaacgcataagtgactttgcaggaaatctaactaatatctctgcctccaaatc 19119300  T

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Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 19071306 - 19071231
Alignment:
Q  181 aattaatcctcctctctcggtgttgatcttttcaaaggg-atcgtttttcccttatctctcggtaccgacgtttca 255  Q
    |||||| |||| ||||| |||| |||||||||||||||| ||| ||||||||||||||||||||||| || |||||    
T  19071306 aattaaccctcgtctcttggtggtgatcttttcaaaggggatcatttttcccttatctctcggtacctacctttca 19071231  T

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Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 19119196 - 19119121
Alignment:
Q  181 aattaatcctcctctctcggtgttgatcttttcaaaggg-atcgtttttcccttatctctcggtaccgacgtttca 255  Q
    |||||| |||| ||||| |||| |||||||||||||||| ||| ||||||||||||||||||||||| || |||||    
T  19119196 aattaaccctcgtctcttggtggtgatcttttcaaaggggatcatttttcccttatctctcggtacctacctttca 19119121  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 543
Target Start/End: Original strand, 5800329 - 5800393
Alignment:
Q  479 aatactccctcgagtcttttatacaagaaacaaaa-ccataaaacatcaaaaaccaaggaaataca 543  Q
    |||||||||||  ||| ||||||||||||||||||  ||||||||||| || ||||||||||||||    
T  5800329 aatactccctccggtcctttatacaagaaacaaaagacataaaacatc-aagaccaaggaaataca 5800393  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 543
Target Start/End: Original strand, 16129850 - 16129913
Alignment:
Q  480 atactccctcgagtcttttatacaagaaacaaaa-ccataaaacatcaaaaaccaaggaaataca 543  Q
    ||||||||||  ||| ||||||||||||||||||  ||||||||||| |||| ||||||||||||    
T  16129850 atactccctccggtcctttatacaagaaacaaaagacataaaacatc-aaaatcaaggaaataca 16129913  T

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Target: scaffold0068 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 255
Target Start/End: Complemental strand, 58846 - 58771
Alignment:
Q  181 aattaatcctcctctctcggtgttgatcttttcaaaggg-atcgtttttcccttatctctcggtaccgacgtttca 255  Q
    |||||| |||| ||||| |||| |||||||||||||||| ||| ||||||||||||||||||||||| || |||||    
T  58846 aattaaccctcgtctcttggtggtgatcttttcaaaggggatcatttttcccttatctctcggtacctacctttca 58771  T

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Target: scaffold0068; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 35 - 92
Target Start/End: Complemental strand, 59015 - 58953
Alignment:
Q  35 atttaaaacgcataagtgacttt-----gcaggcaatctaactaatatctctgcctccaaatc 92  Q
    |||||||||||||||||||||||     |||||||||||||||||||||||| ||||||||||    
T  59015 atttaaaacgcataagtgactttcacttgcaggcaatctaactaatatctcttcctccaaatc 58953  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 181 - 246
Target Start/End: Original strand, 21803094 - 21803160
Alignment:
Q  181 aattaatcctcctctctcggtgttgatcttttcaaaggg-atcgtttttcccttatctctcggtacc 246  Q
    |||||| |||| ||||| |||| |||||||||||||||| || ||||||||||||||||||||||||    
T  21803094 aattaaccctcgtctcttggtggtgatcttttcaaaggggattgtttttcccttatctctcggtacc 21803160  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 92
Target Start/End: Original strand, 21802924 - 21802987
Alignment:
Q  35 atttaaaacgcataagtgactttgc------aggcaatctaactaatatctctgcctccaaatc 92  Q
    |||||||||||||||||||||||||      |||||||| ||||||||||||| ||||||||||    
T  21802924 atttaaaacgcataagtgactttgcacttgcaggcaatccaactaatatctcttcctccaaatc 21802987  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 527
Target Start/End: Original strand, 26848040 - 26848100
Alignment:
Q  468 aaatcatattaaatactccctcgagtcttttatacaagaaacaaaa-ccataaaacatcaa 527  Q
    |||||||||||| |||||||||   |||||||||||||||||||||  |||||||||||||    
T  26848040 aaatcatattaactactccctccgatcttttatacaagaaacaaaagacataaaacatcaa 26848100  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 526
Target Start/End: Complemental strand, 50834316 - 50834261
Alignment:
Q  471 tcatattaaatactccctcgagtcttttatacaagaaacaaaa-ccataaaacatca 526  Q
    |||||| |||||||||||||| || ||||||||||||||||||  ||||||||||||    
T  50834316 tcatatgaaatactccctcga-tcctttatacaagaaacaaaagacataaaacatca 50834261  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 526
Target Start/End: Original strand, 50841537 - 50841592
Alignment:
Q  471 tcatattaaatactccctcgagtcttttatacaagaaacaaaa-ccataaaacatca 526  Q
    |||||| |||||||||||||| || ||||||||||||||||||  ||||||||||||    
T  50841537 tcatatgaaatactccctcga-tcctttatacaagaaacaaaagacataaaacatca 50841592  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 478 - 527
Target Start/End: Complemental strand, 36187622 - 36187572
Alignment:
Q  478 aaatactccctcgagtcttttatacaagaaacaaaa-ccataaaacatcaa 527  Q
    ||||||||||||  ||||||||||||||||||||||  |||||||||||||    
T  36187622 aaatactccctccggtcttttatacaagaaacaaaagacataaaacatcaa 36187572  T

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Target: scaffold0008 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 543
Target Start/End: Original strand, 258216 - 258280
Alignment:
Q  479 aatactccctcgagtcttttatacaagaaacaaaa-ccataaaacatcaaaaaccaaggaaataca 543  Q
    |||||||||||  ||| ||||||||||||||||||  ||||||||||| || ||||||||||||||    
T  258216 aatactccctccggtcctttatacaagaaacaaaagacataaaacatc-aagaccaaggaaataca 258280  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 479 - 543
Target Start/End: Original strand, 19926678 - 19926742
Alignment:
Q  479 aatactccctcgagtcttttatacaagaaacaaaa-ccataaaacatcaaaaaccaaggaaataca 543  Q
    |||||||||||  ||| |||||||||||||||||| |||||||||||| |  ||||||||||||||    
T  19926678 aatactccctccggtcctttatacaagaaacaaaagccataaaacatc-aggaccaaggaaataca 19926742  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 527
Target Start/End: Complemental strand, 13882385 - 13882337
Alignment:
Q  480 atactccctcgagtcttttatacaagaaac-aaaaccataaaacatcaa 527  Q
    ||||||||||  |||||||||||||||||| |||| |||||||||||||    
T  13882385 atactccctccggtcttttatacaagaaacaaaaaacataaaacatcaa 13882337  T

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