View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11575_high_62 (Length: 219)
Name: NF11575_high_62
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_high_62 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 6 - 173
Target Start/End: Complemental strand, 21083293 - 21083125
Alignment:
| Q |
6 |
aaacactcaccatatgccttcaatagctttccccaaaaacgatgttgaaagctgtcgagcaagtccttggcttagatcataaacattaagagtaaccctg |
105 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21083293 |
aaacactcaccatatcccttcaatagctttccccaaaaacgacgttgaaagctgtcgagcaagtccttggcttagatcataaacattaagagtaaccctg |
21083194 |
T |
|
| Q |
106 |
taaccctcctgcaatcaattaaagt-attaaatgtcatgactcatgataaataaaaacactgcaagtat |
173 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
21083193 |
taaccctcctgcaatcaattaaagtaattaaatgtcaggactcatgataaataaaaacaccgcaagtat |
21083125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University