View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_low_10 (Length: 520)
Name: NF11575_low_10
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 18355261 - 18355469
Alignment:
| Q |
18 |
aaaccttcgcttcattgtttccccgccgcctgaaaacaagcaacaacaagaagagagtgagagagagcgccgaaaagcgaaacctgaaaagcgattattc |
117 |
Q |
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| T |
18355261 |
aaacctttgcttcattgtttccccgccgcctgaaaacaagcaacaacaagaagagagtgagagagagcgccgaaaagcgaaacctgaaaagcgattattc |
18355360 |
T |
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| Q |
118 |
tgaaaagcgcttcttcttttggattcacacaacaaccctcttttccatttccttgcatgcacattgcttctcattcattcattcatataatcgcccatta |
217 |
Q |
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| T |
18355361 |
tgaaaagcgcttcttcttttggattcacacaacaaccctcttttccatttccttgcatgcacattgcttctcattcattcattcacataatcccccatta |
18355460 |
T |
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| Q |
218 |
ccaacaagg |
226 |
Q |
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||||||||| |
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| T |
18355461 |
ccaacaagg |
18355469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 371 - 510
Target Start/End: Original strand, 18355614 - 18355753
Alignment:
| Q |
371 |
aaaaatggatctcaaaaaataacctacttatagggttttgtcagtttcttataggctcttttcaaaaaggttaaaagtataataatttattcaaagttaa |
470 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18355614 |
aaaaatggatctcaaaaaataacctacttatagggttttgtcagtttcttataggctcttttcaaaaaggttaaaagtataataatttattcaaagttaa |
18355713 |
T |
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| Q |
471 |
tcatgcccttttggattaactatttagtgtatgttctgtg |
510 |
Q |
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| T |
18355714 |
tcatgcccttttggattaactatttagtgtatgttctgtg |
18355753 |
T |
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