View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_low_13 (Length: 484)
Name: NF11575_low_13
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 1e-66; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 4150858 - 4150693
Alignment:
| Q |
14 |
cagagagagttgtaatgtatctacagacatttcataacaagagagactaagggaaataaaacaaaaaggccaaatcagaatgnnnnnnngttcttaaaag |
113 |
Q |
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| T |
4150858 |
cagagagagttgtaatgtatctacagacatttcataacaagagagaccaagggaaataaaacaaaaaggccaaatcagaatgaaaaaaagttctgaaaag |
4150759 |
T |
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| Q |
114 |
tttaatgcatatttaccttgtcaagtctatgatctcagcctttgccaagggtgactttttcagcaa |
179 |
Q |
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| T |
4150758 |
tttaatgcatatttaccttgtcaagtctatgatctcagcctttgctaagggtgacttttgcagcaa |
4150693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 4166627 - 4166462
Alignment:
| Q |
14 |
cagagagagttgtaatgtatctacagacatttcataacaagagagactaagggaaataaaacaaaaaggccaaatcagaatgnnnnnnngttcttaaaag |
113 |
Q |
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| T |
4166627 |
cagagagagttgtaatgtatctacagacatttcataacaagagagaccaagggaaataaaacaaaaaggccaaatcagaatgaaaaaaagttctgaaaag |
4166528 |
T |
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| Q |
114 |
tttaatgcatatttaccttgtcaagtctatgatctcagcctttgccaagggtgactttttcagcaa |
179 |
Q |
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| T |
4166527 |
tttaatgcatatttaccttgtcaagtctatgatctcagcctttgctaagggtgacttttgcagcaa |
4166462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 170 - 291
Target Start/End: Complemental strand, 4150645 - 4150524
Alignment:
| Q |
170 |
ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccaggaactaagcaaagagtctatacaatgagggagggtgaatcatgatc |
269 |
Q |
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| T |
4150645 |
ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccaggaactgagcaaagagtctatgcaacgagggagggtgaatcatgatc |
4150546 |
T |
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| Q |
270 |
aatttaaagcaagtcatgtttt |
291 |
Q |
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| T |
4150545 |
agtttaaggcaagtcatgtttt |
4150524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 170 - 291
Target Start/End: Complemental strand, 4166414 - 4166293
Alignment:
| Q |
170 |
ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccaggaactaagcaaagagtctatacaatgagggagggtgaatcatgatc |
269 |
Q |
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| T |
4166414 |
ttttcagcaatttcaagttttgtaagtaagggaaatcaaccttccataaaccaggaactgagcaaagagtctatgcaacgagggagggtgaatcatgatc |
4166315 |
T |
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| Q |
270 |
aatttaaagcaagtcatgtttt |
291 |
Q |
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| T |
4166314 |
agtttaaggcaagtcatgtttt |
4166293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 363 - 466
Target Start/End: Complemental strand, 4150452 - 4150349
Alignment:
| Q |
363 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4150452 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagaatagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa |
4150353 |
T |
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| Q |
463 |
gaac |
466 |
Q |
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|||| |
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| T |
4150352 |
gaac |
4150349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 363 - 466
Target Start/End: Complemental strand, 4166221 - 4166118
Alignment:
| Q |
363 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4166221 |
ctatgtttttcctaaaccaatagtcactgaagtacctcaagaatagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaa |
4166122 |
T |
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| Q |
463 |
gaac |
466 |
Q |
| |
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|||| |
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| T |
4166121 |
gaac |
4166118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 392 - 459
Target Start/End: Original strand, 777419 - 777486
Alignment:
| Q |
392 |
aagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttga |
459 |
Q |
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| T |
777419 |
aagtacctcaagagtatttgaagacactgtcagtgattcgatattagcaagctcaactagccaattga |
777486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 392 - 459
Target Start/End: Original strand, 13490165 - 13490232
Alignment:
| Q |
392 |
aagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttga |
459 |
Q |
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| T |
13490165 |
aagtacctgaagagtagttgaagacacagtcaatgattcaatattagcaagctcaactagccagttga |
13490232 |
T |
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