View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_low_14 (Length: 473)
Name: NF11575_low_14
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 18 - 460
Target Start/End: Original strand, 26316668 - 26317109
Alignment:
| Q |
18 |
atgacaaccttgcgagagagctattataactgcatcattaattttttcataaacaaagccacacacatatattccaccaataacaaaatctaacggctca |
117 |
Q |
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| T |
26316668 |
atgacaaccttgcgagagagctattataactgcatcattaattttttcataaacaaagccaca--catatattccaccaataacaaaatctaacggctca |
26316765 |
T |
|
| Q |
118 |
aaacattctagataaatttgctatgttttctctcataaaaatcctaagtaataaattcctaacttgttcccacataccaagatgcaaccttagggatgag |
217 |
Q |
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| T |
26316766 |
aaacattctagataaatttgctatgttttctctcataaaaatcctaagtaataaattcctaacttgttcccacataccaatatgcaaccttagggatgag |
26316865 |
T |
|
| Q |
218 |
gcaaggcatataccgaaccccaacacaggtaaaatacaatcccagagaatctaaacaagaaatcaagacttcacaaggaataaaatataacaagctaata |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26316866 |
gcaaggcatataccgaaccccaacacaggtaaaatacaatcccagagaatctaaacaagaaatcaagacttcacaaggaataaaatataacaagctaata |
26316965 |
T |
|
| Q |
318 |
tatccaaacaattcttttctaatgtacattagtaaaataataggtgtccctccttcaccgggatctcaagcatacacttaaaacgggtcaaatgtctgcc |
417 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
26316966 |
tattcaaacaattcttttctaatgtacattagtaaaataataggtgtccctccttcaccgggatctcaagcatacacttaaaacggatcaaatgtctgcc |
26317065 |
T |
|
| Q |
418 |
tttctcattctacccttttacggctcaccgccc-cctctgctct |
460 |
Q |
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| T |
26317066 |
tttctcattctacccttttacggctcaccgccctcctctgctct |
26317109 |
T |
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