View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_low_17 (Length: 443)
Name: NF11575_low_17
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Complemental strand, 19588076 - 19587684
Alignment:
| Q |
19 |
atcatgaacattaaaatcactcttctgtgactcagtgactttgagagatttcaaattatcctcctcttcttcaagtttttcttgaagtgcttcatattga |
118 |
Q |
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| T |
19588076 |
atcatggacattaaaatcactcttttgtgactcagtgactttgagagatttcaaattatcctcctcttcttcaagtttttcttgaagtgcttcatattga |
19587977 |
T |
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| Q |
119 |
agccttagggtttcagcaatgtcatcgtcttctttcttctttttcccatcctcgaccatcatacgtccggtcagaaaacgttgaatgacagagtcacagg |
218 |
Q |
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| T |
19587976 |
agccttagggttttagcgatgtcgtcgtcttctttcttctttttcccatcctcgaccatcatacgtccggtcagaaaacgttgaatgacagagtcacagg |
19587877 |
T |
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| Q |
219 |
ggtagccacatgcatagaacttgttcttgtttgccgatttgacgatgattgcagtttttgattggcatagaatagatagctctattgctttgttgaaaat |
318 |
Q |
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| T |
19587876 |
ggtagccacatgcatagaacttgttcttgtttggcgatttgacgatgattgcagtttttgattggcatagaatagatagctctattgctttgttgaaaat |
19587777 |
T |
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| Q |
319 |
tccgagtctgcgttctttttcatctaatttcttgatttcatgcatctttctcttccgtgtgttgttgagttttgttccagcattctttctctc |
411 |
Q |
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| T |
19587776 |
tccgagtctgcgttctttttcatctaatttcttgatttcatgcatctttctcttccgtgtgttgttgagttttgttccagcattctttctctc |
19587684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 107 - 325
Target Start/End: Complemental strand, 12895461 - 12895243
Alignment:
| Q |
107 |
gcttcatattgaagccttagggtttcagcaatgtcatcgtcttctttcttctttttcccatcctcgaccatcatacgtccggtcagaaaacgttgaatga |
206 |
Q |
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| T |
12895461 |
gcttcgtatcgaagccttagggtttcaacaatgtcatcatcttgttgattctttttctcattctcgtccgt---atgtccggtcagaaaacgttgaatga |
12895365 |
T |
|
| Q |
207 |
cagagtcacag---gggtagccacatgcatagaacttgttcttgtttgccgatttgacgatgattgcagtttttgattggcatagaatagatagctctat |
303 |
Q |
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||| |||| || |||||||||||| |||||| |||||| | || || ||| | ||||||| |||||||| ||||| ||||||||||||||||||||| |
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| T |
12895364 |
cagcgtcatagttagggtagccacattcatagagcttgttttcgtctggtgatattacgatgagtgcagtttctgattcgcatagaatagatagctctat |
12895265 |
T |
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| Q |
304 |
tgctttgttgaaaattccgagt |
325 |
Q |
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| T |
12895264 |
tgctttgttgaaaattccgagt |
12895243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 346 - 384
Target Start/End: Complemental strand, 12895207 - 12895169
Alignment:
| Q |
346 |
tttcttgatttcatgcatctttctcttccgtgtgttgtt |
384 |
Q |
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|||||||||||||| | |||||||||||||||||||||| |
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| T |
12895207 |
tttcttgatttcatccttctttctcttccgtgtgttgtt |
12895169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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