View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_low_26 (Length: 389)
Name: NF11575_low_26
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 44 - 379
Target Start/End: Complemental strand, 31218991 - 31218658
Alignment:
| Q |
44 |
aataaagtttaaattggataataattgtcgaagttgttgctaatattattttttcgaaaatttgcatggagatgttgatacgagaatggtttctcacact |
143 |
Q |
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| T |
31218991 |
aataaagtttaaattggataataattgtcgaagttgttgctaatattattttttcgaaaatttgcatggagatgttgatccgagaatggtttctcacact |
31218892 |
T |
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| Q |
144 |
caattctccgagttttaactgtataaaccagaaataaaattgtatcacgcaaatattatcaataaatccatgcataaataagaatttatcaatgttatta |
243 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31218891 |
caattctccgagttttaactgtataaaccagaaataaaattgtatcacgcaaatattatcaataaatccatgcataaataagaatttatcaatgttatta |
31218792 |
T |
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| Q |
244 |
tgcaaatcattcaaataacaaatgtatgtactattaagggtatttgaaaggagnnnnnnnnnnnnggtcggcccaaaatcgaccggttatttgagtgttt |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
31218791 |
tgcaaatcattcaaataacaaatgtatgtactattaagggtatttgaaaggag--aaaaaaaaaaggtcagcccaaaatcgaccggttatttgagtgttt |
31218694 |
T |
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| Q |
344 |
cttttttccctttatgttcttttcacgtcctctctg |
379 |
Q |
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||||||| ||||||||||||||||||||||||||| |
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| T |
31218693 |
tttttttcactttatgttcttttcacgtcctctctg |
31218658 |
T |
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