View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_low_27 (Length: 388)
Name: NF11575_low_27
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 37620100 - 37619746
Alignment:
| Q |
18 |
gtagcattatttctacttagccataagactgcagtcttatatataataaacaataaggtccatgacaaaaatatgtcatttataattttannnnnnncaa |
117 |
Q |
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| T |
37620100 |
gtagcattatttctacttagccataagactgcagtcttttatataataaacaataaggtccatgacaaaaatatgtcatttataattttatttttttcaa |
37620001 |
T |
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| Q |
118 |
tctacaagttattttttataagcattacatgtttccctatttttcaaataaaatactataggcatagaatctgtatctcttccattcaatggctagtagg |
217 |
Q |
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| T |
37620000 |
tctacaagttattttttataagcattacatgtttccctatttttcaaataaaatactataggcatagaatttgtatctcttccattcaatggctagtagg |
37619901 |
T |
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| Q |
218 |
taatgatgtgaagatcaatgtttgcacatagtcatcaacagtaaatgtgctttgatcatctccatgttgataaataacttgagcagttcttgccatatta |
317 |
Q |
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| T |
37619900 |
taatgatgtgaagatcaatgtttgcacatagtcatcaacagtaaatgtgctttgatcatctccatgttgataaataacttgagcagttcttgccatatta |
37619801 |
T |
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| Q |
318 |
agagaagctttgacaacagacaaaggtatcgttttggtcatggcaagaccattca |
372 |
Q |
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| T |
37619800 |
agagaagctttgacaacagacaaaggtatggttttggtcgtggcaagaccattca |
37619746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 136; E-Value: 8e-71
Query Start/End: Original strand, 190 - 370
Target Start/End: Complemental strand, 37628232 - 37628048
Alignment:
| Q |
190 |
gtatctcttccattcaatggctag----taggtaatgatgtgaagatcaatgtttgcacatagtcatcaacagtaaatgtgctttgatcatctccatgtt |
285 |
Q |
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| T |
37628232 |
gtatctcttcaattcaatggctaggaattaggaaacgatgtgaagatcaatgtttgcacatagtcatcaacagtaaatgtgctttgatcatctccatgtt |
37628133 |
T |
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| Q |
286 |
gataaataacttgagcagttcttgccatattaagagaagctttgacaacagacaaaggtatcgttttggtcatggcaagaccatt |
370 |
Q |
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| T |
37628132 |
gataaataacttgagcagttctagccatattcagagaagctttgacaacagacaaaggtatagtttttgacatggcaagaccatt |
37628048 |
T |
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