View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_low_28 (Length: 379)
Name: NF11575_low_28
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_low_28 |
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Alignment Details
Target: chr3 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 28 - 361
Target Start/End: Complemental strand, 54075812 - 54075482
Alignment:
| Q |
28 |
ccacccttgtcctcccgcggtaaaattgatttcaacgaaggtaattcatttgaattgaagtggaacccattatttctccaagagggtaaatacatgaatt |
127 |
Q |
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| T |
54075812 |
ccacccttgtcctcccgcggtaaaattgatttcaacgaaggtaattcatttgaattgaagtggaacccattatttctccaagagggtaaatacatgaatt |
54075713 |
T |
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| Q |
128 |
catcaacatccacatacatcatccaagtgcataatcctttggattttgagtacaaaatactgtgagagaatccagcttcttgagtcttaggccaaatcca |
227 |
Q |
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| T |
54075712 |
catcaacatccacatacatcatccaagtgcataatcctttggattttgagtacaaaatactgtgtgagaatccagcttcttgagtcttaggccaaatcca |
54075613 |
T |
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| Q |
228 |
aagcaacgtgcttatattataaccctcttcacaaagctccttaattattctctccaaatcatcatcatcatcgcttccattatcatacaatatgaaattt |
327 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
54075612 |
aagcaacgtgcttatattataaccctcttcacgaagctccttaattattctctccaaatcatcat---catcgcttccattatcatacaatatgaaattt |
54075516 |
T |
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| Q |
328 |
tccactcccacttttgaatgatacacaacccatt |
361 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
54075515 |
tccactcccacttttgaatgatacacaacccatt |
54075482 |
T |
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