View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_low_3 (Length: 746)
Name: NF11575_low_3
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-166; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-166
Query Start/End: Original strand, 1 - 325
Target Start/End: Complemental strand, 39537373 - 39537049
Alignment:
| Q |
1 |
gaaaagtgacgaaaaattgaaagagggttgaacaatagcctttgtatgagccaaaactaaaaaccaaaacagcgaaatttacaaagatgggtaaactacc |
100 |
Q |
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| T |
39537373 |
gaaaagtgacgaaaaattgaaagagagttgaacaatagcctttgtatgagccaaaacaaaaaaccaaaacaaggaaatttacaaagataggtaaactacc |
39537274 |
T |
|
| Q |
101 |
tcagtagacagcaaaaatttgaagggcgatttgcacagtaaaataccaaaaagacagcaaagcattgttactttcaaactcataaagtcaattgacgtat |
200 |
Q |
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| T |
39537273 |
tcagtagacagcaaaaatttgaagggcaatttgcacagtaaaataccaaaaagacagcaaagcattgttactttcaaactcataaagtcaattgacgtat |
39537174 |
T |
|
| Q |
201 |
tccttttaacaaactgagctatctctgtccagagccatgaacaagggttctttgaccaaatttctgcctgcttggaaaagtgcctaatttaatagcaaaa |
300 |
Q |
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| T |
39537173 |
tccttttaacaaactgagctatctctgtccagagccatgaacaagggttctttcaccaaatttctgcctgcttggaaaagtgcctaatttaatagcaaaa |
39537074 |
T |
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| Q |
301 |
tgaatgaaataagtattaagctatc |
325 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
39537073 |
tgaatgaaataagtattaagctatc |
39537049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 220; E-Value: 1e-120
Query Start/End: Original strand, 508 - 731
Target Start/End: Complemental strand, 39536818 - 39536595
Alignment:
| Q |
508 |
ataatcgactatccatacttgactacctctattttgatctacaagtaaatacatgatttataccttcaatttgctttaaagaaccagtccttctaacact |
607 |
Q |
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| T |
39536818 |
ataatcgactatccatacttgactacctctattttgatctacaagtaaatacatgatttataccttcaatttgctttaaagaaccagtccttctaacact |
39536719 |
T |
|
| Q |
608 |
agcttgattgatctgatgtgtgccctgcaaatcaacatcgaattggtgcaaatccgttttctgcagcaggtatatcatgatcctgtattcattactagtg |
707 |
Q |
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| T |
39536718 |
agcttgattgatctgatgtgtgccctgcaaatcaacatcgaattggtgcaaatccgttttctgcagcaggtatatcatgatcctgcattcattactagtg |
39536619 |
T |
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| Q |
708 |
aggcacgttcagctctttcttctt |
731 |
Q |
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|||||||||||||||||||||||| |
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| T |
39536618 |
aggcacgttcagctctttcttctt |
39536595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 372 - 511
Target Start/End: Complemental strand, 39537002 - 39536863
Alignment:
| Q |
372 |
tattagattagtcatccaaacctaaagatagtgttgaggatagatgtttagagagtcaaccaaattaaaagctttgttgaacgataaacatacaatatgt |
471 |
Q |
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| T |
39537002 |
tattagattagtcatccaaacctaaagatagtgttgaggatagatgtttagagagtcaaccaaattaaaagctttgttgaacgataaacataaaatatgt |
39536903 |
T |
|
| Q |
472 |
aaaagactttgagtaattattgacaagagtcttgtgataa |
511 |
Q |
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| T |
39536902 |
aaaagactttgagtaattattgacaagagtcttgtgataa |
39536863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 524 - 632
Target Start/End: Complemental strand, 2362200 - 2362093
Alignment:
| Q |
524 |
acttgactacctctattttgatctacaagtaaatacatgatttataccttcaatttgctttaaagaaccagtccttctaacactagcttgattgatctga |
623 |
Q |
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|||| ||||||||||| | | |||||||| |||||| |||| |||||||||||| ||| ||| ||||||||| || | |||| |||||||||||| |||| |
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| T |
2362200 |
acttaactacctctatgt-gctctacaagaaaatacttgatatataccttcaatctgcattacagaaccagttctgcaaacagtagcttgattgacctga |
2362102 |
T |
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| Q |
624 |
tgtgtgccc |
632 |
Q |
| |
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|||| |||| |
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|
| T |
2362101 |
tgtgagccc |
2362093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 557 - 625
Target Start/End: Complemental strand, 2364418 - 2364350
Alignment:
| Q |
557 |
tacatgatttataccttcaatttgctttaaagaaccagtccttctaacactagcttgattgatctgatg |
625 |
Q |
| |
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||||||||||||||||||||| |||| | ||||||||| ||||||||||| |||||||||| |||||| |
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| T |
2364418 |
tacatgatttataccttcaatctgctacacagaaccagttcttctaacacttgcttgattgacctgatg |
2364350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 518 - 615
Target Start/End: Original strand, 2489699 - 2489796
Alignment:
| Q |
518 |
atccatacttgactacctctattttgatctacaagtaa-atacatgatttataccttcaatttgctttaaagaaccagtccttctaacactagcttgat |
615 |
Q |
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| T |
2489699 |
atccttacttgactacctctgttt-gttctacaaaaaatatatatgatttataccttcaatctgcttcacagaatcagttcttttaacacaagcttgat |
2489796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 515 - 573
Target Start/End: Original strand, 2543996 - 2544053
Alignment:
| Q |
515 |
actatccatacttgactacctctattttgatctacaagtaaatacatgatttatacctt |
573 |
Q |
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|||| ||||||||||||||||||| || | |||| ||| |||||||||||||||||||| |
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| T |
2543996 |
actacccatacttgactacctctactt-gttctataagaaaatacatgatttatacctt |
2544053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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