View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11575_low_31 (Length: 352)
Name: NF11575_low_31
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_low_31 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 7 - 334
Target Start/End: Complemental strand, 49700677 - 49700350
Alignment:
| Q |
7 |
acaagaactgacaataagcagatctacaacaaaataaacatgtgaagaaagagtctgtctcannnnnnnnnnnnnnnngctctctagtgagacttattga |
106 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
49700677 |
acaagaactgacaataagcagacctacaacaaaataaacatgtgaagaaagagtctgtctcatttttattttctttttgctctctagtgaaacttattga |
49700578 |
T |
|
| Q |
107 |
ttaccaaataccgaaagatgctcactgatcacagacctaagttttatcacatacgatctcagtttttgtcaaatcaaatcaaaggataaccaaaaagaaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49700577 |
ttaccaaataccgaaagatgctcactgatcacagaccaaagttttatcacatacgatctcagtttttgtcaaatcaaatcaaaggataaccaaaaagaaa |
49700478 |
T |
|
| Q |
207 |
atattaccaattgaaaaattaggtcttttgacactcccttaaacaagtatacgttgtccatcattgaaaagaataagtagtatgagatactagatcgaat |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
49700477 |
atattaccaattgaaaaattaggtcttttgacactcccttaaacaagtatacgttgtccatcattgaaaagaataagtagtatgagatactagattgaat |
49700378 |
T |
|
| Q |
307 |
agcttttggaagggaatcaataatctct |
334 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
49700377 |
agcttttggaagggaatcaataatctct |
49700350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University