View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11575_low_36 (Length: 306)
Name: NF11575_low_36
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 16 - 291
Target Start/End: Original strand, 5916871 - 5917147
Alignment:
| Q |
16 |
aaacatgcattaatgtcttgtctttgaacttacacttttcctggtaagggtaagaaaagtaaactaatcttcccaacttaaattccttccactgatcagc |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5916871 |
aaacatgcattaatgtcttgtctttgaacttacacttttcctggtaagggtaagaaaagtaaactaatcttcccaacttaaattcctttcactgatcagc |
5916970 |
T |
|
| Q |
116 |
atcatgggactgtttgtaaagtggtttggtccaactggttgttgaaagaaagcttacaaatctttattatgctatatacgtcggaagctgatcatatggt |
215 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5916971 |
atcatgggattgtttgtaaagtggtttggtccaactggttgttgaaagaaagcttacaaatctttattatgctatatacgtcggaagctgatcatatggt |
5917070 |
T |
|
| Q |
216 |
gattaatcagcttgcgaatctgattcctaatccatcagcttgcagcaattcagaatcca-tttcatacttgattcat |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
|
|
| T |
5917071 |
gattaatcagcttgcgaatctgattcctaatccatcagcttgcagcaattcagaatcgattttcatacttgattcat |
5917147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University