View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_low_4 (Length: 601)
Name: NF11575_low_4
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 498; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 498; E-Value: 0
Query Start/End: Original strand, 16 - 585
Target Start/End: Original strand, 32376460 - 32377029
Alignment:
| Q |
16 |
acaatgtagtgatacatagaaatcaagaagaatcatttccctcttttgctttcagagactatagagattctctttgtattactaatgctatcggtggatt |
115 |
Q |
| |
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|||||||||| ||||||| ||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||| |||||||||||| || ||||| |
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| T |
32376460 |
acaatgtagttatacataacaatcaagaagaatcatttccctcttttactttcagagactaaagagcttctctttgtactactaatgctattgggggatt |
32376559 |
T |
|
| Q |
116 |
cattgttccatctttacctctttcaagagaagaacttgagccagatttggctgatactacgtcttccgtagccgaagattgatcgcgggaatcaatttct |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32376560 |
cattgttccatctttacctctttcaagagaagaacttgagccagatttggctgatactacgtcttccgtagccgaagattgatcgcgggaatcaatttct |
32376659 |
T |
|
| Q |
216 |
ttcatggataacttatcttccaagagatcataactgttcccagttctagcttcttgagcaagagagcaccaacaacagcataaccaaagtgtgcaatcag |
315 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
32376660 |
ttcatggataacttatcttccaagatatcataactattcccagtcctggcttcttgagcaagagagcaccaacagcagcataaccaaagtgtgcaatcag |
32376759 |
T |
|
| Q |
316 |
aaagtgatggttttccaaaacagaatttataggcaggcaaattgaacctctttctcatttgaatcctccaaaatccaccataaagtaaaccacaaaaact |
415 |
Q |
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||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32376760 |
aaaatgatggttttccaaaacagaattcataggcaggcaaattgaacctctttctcatttgaatcctccaaaatccaccataaagtaaaccacaaaaact |
32376859 |
T |
|
| Q |
416 |
aagaatgattccaaaagctactagtgcttgtctaacattgtcatcatcaattctaacagaagccaatacaaatatccaaaagggagccatacaaaacagc |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32376860 |
aagaatgattccaaaagctactagtgcttgtctaacattgtcatcatcaattctaacagaagccaatacaaatatccaaaagggagccatacaaaacagc |
32376959 |
T |
|
| Q |
516 |
ataaatgtagctatatgaacatacatgttcccaaaaccaagtctctccatgttccatccaaacacacaaa |
585 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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|
| T |
32376960 |
ataaatgtagctatatgaacatacatgttcccaaatccaagtctctccatgttccatccaaacgcacaaa |
32377029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 16 - 585
Target Start/End: Original strand, 32364759 - 32365344
Alignment:
| Q |
16 |
acaatgtagtgatacatagaaatcaagaagaatcatttccctcttttgctttcagagacta---tag-agattctctttgtattactaatgctatcggtg |
111 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||| || |||||||||||||| ||||||||| |||| |
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| T |
32364759 |
acaatgtagtgatacataacaatcaagaagaatcatttccctcttttgctttcagagaataaggtaggagcttctctttgtattaataatgctattggtg |
32364858 |
T |
|
| Q |
112 |
gattcattgttccatctttacctctttcaagagaagaacttgagccagatttggctgatactacgtctt------cc------gtagccgaagattgatc |
199 |
Q |
| |
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||||||| ||| ||||||||| || ||||||||||||||||| | | |||||| |||||||||||||| || | | ||||||||||||| |
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|
| T |
32364859 |
gattcatcgtttcatctttacgtcgttcaagagaagaacttgtgtcggatttgcttgatactacgtcttgtccagccaaacatgaaaccgaagattgatc |
32364958 |
T |
|
| Q |
200 |
gcgggaatcaatttctttcatggataacttatcttccaagagatcataactgttcccagttctagcttcttgagcaagagagcaccaacaacagcataac |
299 |
Q |
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||| | ||||||||||||||||||||||||||||||||||| ||||||||| |||||||| || |||||||||||||||||||||||||| ||||||||| |
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| T |
32364959 |
gcgagtatcaatttctttcatggataacttatcttccaagatatcataactattcccagtcctggcttcttgagcaagagagcaccaacagcagcataac |
32365058 |
T |
|
| Q |
300 |
caaagtgtgcaatcagaaagtgatggttttccaaaacagaatttataggcaggcaaattgaacctctttctcatttgaatcctccaaaatccaccataaa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32365059 |
caaagtgtgcaatcagaaagtgatggttttccaaaacagaatttataggcaggcaaattgaacctctttctcatttgaatcctccaaaatccaccataaa |
32365158 |
T |
|
| Q |
400 |
gtaaaccacaaaaactaagaatgattccaaaagctactagtgcttgtctaacattgtcatcatcaattctaacagaagccaatacaaatatccaaaaggg |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
32365159 |
gtaaaccacaaaaactaagaatgattccaaaagctactagtgtttgtctaacattgtcatcatcaattctaacagaagccaatacaaatatccaaaaggg |
32365258 |
T |
|
| Q |
500 |
agccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaaaccaagtctctccatgttccatccaaacacacaaa |
585 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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|
| T |
32365259 |
agccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaatccaagtctctccatgttccatccaaacgcacaaa |
32365344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 88; Significance: 5e-42; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 266 - 577
Target Start/End: Original strand, 36121643 - 36121954
Alignment:
| Q |
266 |
ttcttgagcaagagagcaccaacaacagcataaccaaagtgtgcaatcagaaagtgatggttttccaaaacagaatttataggcaggcaaattgaacctc |
365 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||| ||||||| |||| | || || || |||||||| | ||| | ||||||||| ||||| |
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|
| T |
36121643 |
ttcttgagcaagagagcaccaacaacagaatagccaaagtatgcaatccgaaaccgcaggcttgccgaaacagaagtcataagtaggcaaattatacctc |
36121742 |
T |
|
| Q |
366 |
tttctcatttgaatcctccaaaatccaccataaagtaaaccacaaaaactaagaatgattccaaaagctactagtgcttgtctaacattgtcatcatcaa |
465 |
Q |
| |
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||||||||||| ||||||||||| |||||||| || | ||| |||||| |||| || ||| | ||||||| ||| |||||| ||||||| |||| |
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| T |
36121743 |
tttctcatttggatcctccaaaaaccaccatagagcataccgaaaaaacatagaacaatcccagcacctactagacattgcctaacagtgtcatcctcaa |
36121842 |
T |
|
| Q |
466 |
ttctaacagaagccaatacaaatatccaaaagggagccatacaaaacagcataaatgtagctatatgaacatacatgttcccaaaaccaagtctctccat |
565 |
Q |
| |
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| |||||| |||||| | || ||||||||||| |||||||| || |||||||| || || || |||||||||||||| ||||| |||||||||||||| |
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| T |
36121843 |
tattaacagcagccaagatgaaaatccaaaagggggccatacagaaaagcataaaagtggcaatgtgaacatacatgtttccaaagccaagtctctccat |
36121942 |
T |
|
| Q |
566 |
gttccatccaaa |
577 |
Q |
| |
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||||| ||||| |
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|
| T |
36121943 |
attccaaccaaa |
36121954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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