View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11575_low_40 (Length: 274)

Name: NF11575_low_40
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11575_low_40
NF11575_low_40
[»] chr1 (8 HSPs)
chr1 (18-259)||(28326758-28326999)
chr1 (147-252)||(21158520-21158625)
chr1 (117-198)||(28239753-28239833)
chr1 (19-76)||(21158734-21158791)
chr1 (143-183)||(24621179-24621219)
chr1 (169-204)||(29141277-29141312)
chr1 (23-71)||(2288583-2288631)
chr1 (131-183)||(47569740-47569791)
[»] chr6 (1 HSPs)
chr6 (148-196)||(384136-384184)
[»] chr2 (1 HSPs)
chr2 (144-180)||(9066866-9066902)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 18 - 259
Target Start/End: Original strand, 28326758 - 28326999
Alignment:
Q  18 acttatttggtgaagcattgacgttaccgaaagacagtggttgcattccagatgatgattaggctctctgtaagatatatggaaataaggagggtgaatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28326758 acttatttggtgaagcattgacgttaccgaaagacagtggttgcattccagatgatgattaggctctctgtaagatatatggaaataaggagggtgaatt 28326857  T
Q  118 tgtttgcgaaatttagattacatgcttttttagtttgctaattaaaggactatgcttttgcttttagttgcacttctattctataggctagtggccaagt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28326858 tgtttgcgaaatttagattacatgcttttttagtttgctaattaaaggactatgcttttgcttttagttgcacttctattctataggctagtggccaagt 28326957  T
Q  218 gagcggacaataataatgtttagcgtattctaattcgttcat 259  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  28326958 gagcggacaataataatgtttagcgtattctaattcgttcat 28326999  T

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Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 147 - 252
Target Start/End: Complemental strand, 21158625 - 21158520
Alignment:
Q  147 ttagtttgctaattaaaggactatgcttttgcttttagttgcacttctattctataggctagtggccaagtgagcggacaataataatgtttagcgtatt 246  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |  |||||| || |||||||||||||||||||  ||||    
T  21158625 ttagtatgctaattaaaggactatgcttttgctattagttgcacttctattctataagctactttccaagtaagtggacaataataatgtttagtatatt 21158526  T
Q  247 ctaatt 252  Q
    ||||||    
T  21158525 ctaatt 21158520  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 198
Target Start/End: Original strand, 28239753 - 28239833
Alignment:
Q  117 ttgtttgcgaaatttagattacatgcttttttagtttgctaattaaaggactatgcttttgcttttagttgcacttctattc 198  Q
    ||||||| | ||| ||||||||||||||| | |||||||||||| ||||||| || ||||||||||| ||||||||||||||    
T  28239753 ttgtttgtgcaatgtagattacatgctttct-agtttgctaatttaaggactttgtttttgcttttaattgcacttctattc 28239833  T

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Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 21158791 - 21158734
Alignment:
Q  19 cttatttggtgaagcattgacgttaccgaaagacagtggttgcattccagatgatgat 76  Q
    ||||||| ||||||| ||||| |||| ||||||||||||||||||||| |||||||||    
T  21158791 cttatttagtgaagctttgacattactgaaagacagtggttgcattcctgatgatgat 21158734  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 183
Target Start/End: Complemental strand, 24621219 - 24621179
Alignment:
Q  143 ttttttagtttgctaattaaaggactatgcttttgctttta 183  Q
    ||||||||||| ||||||||||||| |||||||||||||||    
T  24621219 ttttttagttttctaattaaaggaccatgcttttgctttta 24621179  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 169 - 204
Target Start/End: Complemental strand, 29141312 - 29141277
Alignment:
Q  169 atgcttttgcttttagttgcacttctattctatagg 204  Q
    ||||||||||||||||||||||||||||| ||||||    
T  29141312 atgcttttgcttttagttgcacttctattatatagg 29141277  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 71
Target Start/End: Complemental strand, 2288631 - 2288583
Alignment:
Q  23 tttggtgaagcattgacgttaccgaaagacagtggttgcattccagatg 71  Q
    |||| |||||||| ||||||||| ||||||| |||||||||||| ||||    
T  2288631 tttgctgaagcatggacgttaccaaaagacaatggttgcattcctgatg 2288583  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 47569740 - 47569791
Alignment:
Q  131 tagattacatgcttttttagtttgctaattaaaggactatgcttttgctttta 183  Q
    ||||||||||||||| | ||||| |||||| |||||||||| |||||||||||    
T  47569740 tagattacatgctttct-agttttctaatttaaggactatgtttttgctttta 47569791  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 196
Target Start/End: Complemental strand, 384184 - 384136
Alignment:
Q  148 tagtttgctaattaaaggactatgcttttgcttttagttgcacttctat 196  Q
    |||||| |||||| | | ||||||||| |||||||||||||||||||||    
T  384184 tagttttctaatttatgcactatgcttctgcttttagttgcacttctat 384136  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 9066866 - 9066902
Alignment:
Q  144 tttttagtttgctaattaaaggactatgcttttgctt 180  Q
    ||||| ||||||||||| |||||||||||||||||||    
T  9066866 tttttggtttgctaattgaaggactatgcttttgctt 9066902  T

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