View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11575_low_42 (Length: 273)

Name: NF11575_low_42
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11575_low_42
NF11575_low_42
[»] chr5 (22 HSPs)
chr5 (20-263)||(30748963-30749206)
chr5 (20-263)||(30677708-30677951)
chr5 (31-261)||(29871517-29871747)
chr5 (20-261)||(30482724-30482965)
chr5 (20-256)||(30242919-30243155)
chr5 (35-263)||(30713962-30714202)
chr5 (31-263)||(30435153-30435385)
chr5 (31-261)||(30339067-30339297)
chr5 (35-261)||(30059692-30059930)
chr5 (20-246)||(30399385-30399623)
chr5 (35-148)||(17418824-17418937)
chr5 (20-143)||(29852619-29852742)
chr5 (172-263)||(29852783-29852874)
chr5 (183-263)||(30206008-30206088)
chr5 (177-263)||(17418697-17418783)
chr5 (102-146)||(30474774-30474818)
chr5 (35-143)||(30205848-30205956)
chr5 (173-243)||(17982400-17982470)
chr5 (102-135)||(30522299-30522332)
chr5 (102-135)||(30562639-30562672)
chr5 (105-138)||(30430351-30430384)
chr5 (173-250)||(30474854-30474931)
[»] chr4 (3 HSPs)
chr4 (20-263)||(20297131-20297386)
chr4 (173-244)||(13616084-13616155)
chr4 (173-217)||(52351439-52351483)
[»] chr7 (2 HSPs)
chr7 (20-129)||(26706652-26706761)
chr7 (172-249)||(26706816-26706893)
[»] chr1 (4 HSPs)
chr1 (173-263)||(7098897-7098987)
chr1 (173-250)||(7582272-7582349)
chr1 (102-139)||(7582395-7582432)
chr1 (102-150)||(7098814-7098862)


Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 20 - 263
Target Start/End: Original strand, 30748963 - 30749206
Alignment:
Q  20 aagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtgaggt 119  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||    
T  30748963 aagttcaagagaaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggt 30749062  T
Q  120 tgaagcacttcaagtacttgctcagcactgaccgtagattccttcttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattag 219  Q
    ||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  30749063 tgaagcacttcaagtacttgctcagcactaaccgtagattcctccttgtatacccatgacaagcataattcatgaaggtcttttttacccatcaaattag 30749162  T
Q  220 ccgcttcagcttcagataaactaccaacattgtttaatcctttg 263  Q
    |||||||||||||||||||||| |||||||||||||||||||||    
T  30749163 ccgcttcagcttcagataaactgccaacattgtttaatcctttg 30749206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 30677951 - 30677708
Alignment:
Q  20 aagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtgaggt 119  Q
    |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||    
T  30677951 aagttcaagagaaattaaattactaagaataattatccaacttggtaacgataatctttcatagtaatttattgtcaagcatttgagatttgagtgaggt 30677852  T
Q  120 tgaagcacttcaagtacttgctcagcactgaccgtagattccttcttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattag 219  Q
    | ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  30677851 ttaagcacttcaagtacttgctcagcactaaccgtagattcctccttgtatccccatgacaagcataattcatgaaggtcttttttatccatcaatttag 30677752  T
Q  220 ccgcttcagcttcagataaactaccaacattgtttaatcctttg 263  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  30677751 ccgcttcagcttcagataaactagcaacattgtttaatcctttg 30677708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 31 - 261
Target Start/End: Original strand, 29871517 - 29871747
Alignment:
Q  31 aaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtgaggttgaagcacttc 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||    
T  29871517 aaattaaattactaagaataattatccaacttggtaacgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagctcttc 29871616  T
Q  131 aagtacttgctcagcactgaccgtagattccttcttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagct 230  Q
     ||||||||||||||||| |   |||||||||  |   ||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  29871617 gagtacttgctcagcactaattatagattcctgttgcgatatccatgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagct 29871716  T
Q  231 tcagataaactaccaacattgtttaatcctt 261  Q
    ||||||||||| |||||||||||||||||||    
T  29871717 tcagataaactgccaacattgtttaatcctt 29871747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 20 - 261
Target Start/End: Original strand, 30482724 - 30482965
Alignment:
Q  20 aagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtgaggt 119  Q
    |||||||| | ||||||||||||||||||   |||||||||||||||||||||| ||||||| || ||||||||||||| ||||||||||||||||||||    
T  30482724 aagttcaagagaaattaaattactaagaaggcttatccaacttggtaacgataacccttcattgtaatttattgtcaagcatttgagatttgagtgaggt 30482823  T
Q  120 tgaagcacttcaagtacttgctcagcactgaccgtagattccttcttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattag 219  Q
    |||||| |||||||||||||||||||||| |   |||||||||  | | ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  30482824 tgaagctcttcaagtacttgctcagcactaattatagattcctgttgggatatccatgacaagcataattcatgaaggtcttttttacccatcaaattag 30482923  T
Q  220 ccgcttcagcttcagataaactaccaacattgtttaatcctt 261  Q
    ||||||||||||||||||| || |||||||||||||||||||    
T  30482924 ccgcttcagcttcagataacctgccaacattgtttaatcctt 30482965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 256
Target Start/End: Complemental strand, 30243155 - 30242919
Alignment:
Q  20 aagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtgaggt 119  Q
    |||||||| | |||||||||||||||||| |||||||||||||||||| |||||||| ||||||  | ||||| ||||| | ||||||||||||||||||    
T  30243155 aagttcaagagaaattaaattactaagaagaattatccaacttggtaaggataatccctcatagaaacttattttcaagcacttgagatttgagtgaggt 30243056  T
Q  120 tgaagcacttcaagtacttgctcagcactgaccgtagattccttcttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattag 219  Q
    ||||||||||||||||||||||||||||| |   ||||||| |  | | ||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  30243055 tgaagcacttcaagtacttgctcagcactaattatagattcatgttgggatatccatgacaagcataattcatgaaggtcttttttacccatcaaattag 30242956  T
Q  220 ccgcttcagcttcagataaactaccaacattgtttaa 256  Q
    |||||||||||||||||||||| ||||||||||||||    
T  30242955 ccgcttcagcttcagataaactgccaacattgtttaa 30242919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 35 - 263
Target Start/End: Complemental strand, 30714202 - 30713962
Alignment:
Q  35 taaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtgaggttgaagcacttcaagt 134  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| |||| |||    
T  30714202 taaattactaagaataattatccaacttggtaatgataatccttcatagtaatttattgtcaagcatttgagatttgagtgaggttgaagctcttcgagt 30714103  T
Q  135 acttgctcagcactgaccgtag-----------attcctt-cttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccg 222  Q
    |||||||||||||| ||   ||           |||||||  |||| |  |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30714102 acttgctcagcactaacaacaggggtctttggaattccttgtttgtctttccatgacaagtataattcatgaaggtcttttttacccatcaaattagccg 30714003  T
Q  223 cttcagcttcagataaactaccaacattgtttaatcctttg 263  Q
    ||||||||||| ||||||| |||||||||||||||||||||    
T  30714002 cttcagcttcaaataaactgccaacattgtttaatcctttg 30713962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 129; E-Value: 8e-67
Query Start/End: Original strand, 31 - 263
Target Start/End: Original strand, 30435153 - 30435385
Alignment:
Q  31 aaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtgaggttgaagcacttc 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||   |||| | |||||||||||||||||||||||| ||||    
T  30435153 aaattaaattactaagaataattatccaacttggtaacgataatccgtcatagcaatttatatccaagcacttgagatttgagtgaggttgaagctcttc 30435252  T
Q  131 aagtacttgctcagcactgaccgtagattccttcttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagct 230  Q
     |||| ||||||||  || |   |||||||||  |   ||  ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  30435253 gagtaattgctcagatctaattatagattcctgttgcgatatccacgacaagcataattcatgaaggtcttttttacccttcaaattagccgcttcagct 30435352  T
Q  231 tcagataaactaccaacattgtttaatcctttg 263  Q
    |||||||||||||||||||||||||||||||||    
T  30435353 tcagataaactaccaacattgtttaatcctttg 30435385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 31 - 261
Target Start/End: Complemental strand, 30339297 - 30339067
Alignment:
Q  31 aaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtgaggttgaagcacttc 130  Q
    ||||||||||||||||||   ||||||||||||||||||||||||||||||||  ||||| ||||||| | |||||||||||||||||||||||| ||||    
T  30339297 aaattaaattactaagaaggcttatccaacttggtaacgataatccttcatagaaatttactgtcaaggaattgagatttgagtgaggttgaagctcttc 30339198  T
Q  131 aagtacttgctcagcactgaccgtagattccttcttgtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagct 230  Q
     || |||||||||||||| |   |||||||||  |   ||  ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  30339197 gagcacttgctcagcactaattatagattcctgttgcgatatccacgacaagcataattgatgaaggtcttttttacccatcaaattagccgcttcagct 30339098  T
Q  231 tcagataaactaccaacattgtttaatcctt 261  Q
    |||||||| || |||||||||||||||||||    
T  30339097 tcagataacctgccaacattgtttaatcctt 30339067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 35 - 261
Target Start/End: Original strand, 30059692 - 30059930
Alignment:
Q  35 taaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtgaggttgaagcacttcaagt 134  Q
    |||||||||||||||||||||||||||||| || |||||||| ||||||  | ||||| ||||| | ||||||||||||||||||||||| |||||||||    
T  30059692 taaattactaagaataattatccaacttggcaaggataatccctcatagaaacttattttcaagcagttgagatttgagtgaggttgaagaacttcaagt 30059791  T
Q  135 acttgctcagcactgaccgtag-----------attccttctt-gtatccccatgacaagcataattcatgaaggtcttttttacccatcaaattagccg 222  Q
    ||||||||| |||| ||   ||           ||||||| || || |  |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30059792 acttgctcaacactaacaacagggttctttggaattccttgtttgtctttccatgacaagtataattcatgaaggtcttttttacccatcaaattagccg 30059891  T
Q  223 cttcagcttcagataaactaccaacattgtttaatcctt 261  Q
    ||||||||||| |||| || |||||||||||||||||||    
T  30059892 cttcagcttcaaataacctgccaacattgtttaatcctt 30059930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 20 - 246
Target Start/End: Original strand, 30399385 - 30399623
Alignment:
Q  20 aagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtgaggt 119  Q
    |||||||| | ||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||| ||||| | ||||||||||||||||||    
T  30399385 aagttcaagagaaactaaattactaagaataattatccaacttggtaatgataatccgtcatagtaatttattttcaagcacttgagatttgagtgaggt 30399484  T
Q  120 tgaagcacttcaagtacttgctcagcactga------------ccgtagattccttcttgtatccccatgacaagcataattcatgaaggtcttttttac 207  Q
    ||||||||||| |||||||||| |||||| |              ||| || | |  |||  | ||||||||||||||||||||||||||||||||||||    
T  30399485 tgaagcacttcgagtacttgctgagcactaatagttgggggattggtaaatccatagttgctttcccatgacaagcataattcatgaaggtcttttttac 30399584  T
Q  208 ccatcaaattagccgcttcagcttcagataaactaccaa 246  Q
    ||||||||| |||||||| ||||| ||||||||| ||||    
T  30399585 ccatcaaatcagccgcttgagcttgagataaactgccaa 30399623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 35 - 148
Target Start/End: Complemental strand, 17418937 - 17418824
Alignment:
Q  35 taaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtgaggttgaagcacttcaagt 134  Q
    |||||||||||||||| ||||||||||||||||| ||| ||| ||||||| | ||||| ||||| | |||||||||||||||||||||||||||||||||    
T  17418937 taaattactaagaatacttatccaacttggtaacaatattccatcatagtaagttattttcaagcacttgagatttgagtgaggttgaagcacttcaagt 17418838  T
Q  135 acttgctcagcact 148  Q
    | ||||||||||||    
T  17418837 agttgctcagcact 17418824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 143
Target Start/End: Original strand, 29852619 - 29852742
Alignment:
Q  20 aagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtgaggt 119  Q
    |||||||| | |||||||| |||||||||   ||||||||||||||||||||||||||||||||| ||||||   |||| | ||||||||||||||||||    
T  29852619 aagttcaagagaaattaaactactaagaaggcttatccaacttggtaacgataatccttcatagtaatttatgtccaagcacttgagatttgagtgaggt 29852718  T
Q  120 tgaagcacttcaagtacttgctca 143  Q
    |||||| |||| ||||||||||||    
T  29852719 tgaagctcttcgagtacttgctca 29852742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 172 - 263
Target Start/End: Original strand, 29852783 - 29852874
Alignment:
Q  172 cccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttg 263  Q
    |||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| || ||||  ||||| ||||||    
T  29852783 cccatgacaaacataattcatgaatgtctgttttacccatcaaattagccgcttcagcttcagataaactgcccacatcttttaagcctttg 29852874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 183 - 263
Target Start/End: Original strand, 30206008 - 30206088
Alignment:
Q  183 cataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttg 263  Q
    |||||||| || ||||||||||||||||||||||| || |||| ||||||||||||||||| |||||  ||||| ||||||    
T  30206008 cataattcctggaggtcttttttacccatcaaattggctgcttgagcttcagataaactacaaacatcatttaaacctttg 30206088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 177 - 263
Target Start/End: Complemental strand, 17418783 - 17418697
Alignment:
Q  177 gacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttg 263  Q
    |||||||||||||| || |||||||||||||| ||||| |||||  ||| ||||||||||||| |||||||||  ||||| ||||||    
T  17418783 gacaagcataattcttggaggtcttttttacctatcaacttagcttcttgagcttcagataaattaccaacatcttttaagcctttg 17418697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 30474774 - 30474818
Alignment:
Q  102 ttgagatttgagtgaggttgaagcacttcaagtacttgctcagca 146  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  30474774 ttgagatttgagtgaggttgaagcatttcaagtacttgctcagca 30474818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 35 - 143
Target Start/End: Original strand, 30205848 - 30205956
Alignment:
Q  35 taaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtgaggttgaagcacttcaagt 134  Q
    ||||||||| |||||| ||||||||||||||||  ||||||  | ||||| |   ||| ||||    ||||||||||||||||||||||||||||||| |    
T  30205848 taaattactgagaatacttatccaacttggtaagaataatctgttatagtgacaaattatcaacctcttgagatttgagtgaggttgaagcacttcaaat 30205947  T
Q  135 acttgctca 143  Q
    | |||||||    
T  30205948 agttgctca 30205956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 243
Target Start/End: Original strand, 17982400 - 17982470
Alignment:
Q  173 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactac 243  Q
    |||||||| |||||||||||  |||||||||||||| || ||||| ||  ||||| |||||||||||||||    
T  17982400 ccatgacaggcataattcattgaggtcttttttacctataaaatttgcttcttcaacttcagataaactac 17982470  T

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Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 30522332 - 30522299
Alignment:
Q  102 ttgagatttgagtgaggttgaagcacttcaagta 135  Q
    ||||||||||||||||||||||||||||||||||    
T  30522332 ttgagatttgagtgaggttgaagcacttcaagta 30522299  T

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Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 135
Target Start/End: Complemental strand, 30562672 - 30562639
Alignment:
Q  102 ttgagatttgagtgaggttgaagcacttcaagta 135  Q
    ||||||||||||||||||||||||||||||||||    
T  30562672 ttgagatttgagtgaggttgaagcacttcaagta 30562639  T

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Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 105 - 138
Target Start/End: Original strand, 30430351 - 30430384
Alignment:
Q  105 agatttgagtgaggttgaagcacttcaagtactt 138  Q
    ||||||||||||| ||||||||||||||||||||    
T  30430351 agatttgagtgagattgaagcacttcaagtactt 30430384  T

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Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 173 - 250
Target Start/End: Original strand, 30474854 - 30474931
Alignment:
Q  173 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacatt 250  Q
    |||||||||| ||||||| || ||||| ||||||||||||||||| ||   |  ||||||| |||| |||||||||||    
T  30474854 ccatgacaaggataattcttggaggtcctttttacccatcaaattggcatgtcgagcttcaaataagctaccaacatt 30474931  T

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Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 263
Target Start/End: Complemental strand, 20297386 - 20297131
Alignment:
Q  20 aagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtgaggt 119  Q
    |||||||| | ||| |||||||||||||||||||||||||||||||||| | ||||| ||||||  |||||||  |||| | ||||||||||| ||||||    
T  20297386 aagttcaaaagaaactaaattactaagaataattatccaacttggtaaccacaatccatcatagcaatttatttccaagcacttgagatttgactgaggt 20297287  T
Q  120 tgaagcacttcaagtacttgctcagcactgac------------cgtagattccttcttgtatccccatgacaagcataattcatgaaggtcttttttac 207  Q
    ||||||||||| ||||||| ||||||||| ||             ||| |||  |  |||  | |||| |||||||||||||||||||||||||||||||    
T  20297286 tgaagcacttcgagtactttctcagcacttacagttggtggcttggtaaatttatcattgctttcccaagacaagcataattcatgaaggtcttttttac 20297187  T
Q  208 ccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttg 263  Q
    |||||||||| ||  ||| ||||||||||| ||| |||||||  ||||| ||||||    
T  20297186 ccatcaaattggcttcttgagcttcagatatactgccaacatcttttaagcctttg 20297131  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 13616084 - 13616155
Alignment:
Q  173 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactacc 244  Q
    |||||||||| |||||||||  |||||||||||| |||| ||||| ||  ||| ||||||| ||||||||||    
T  13616084 ccatgacaagaataattcatcgaggtcttttttatccattaaattggcttcttgagcttcaaataaactacc 13616155  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 52351439 - 52351483
Alignment:
Q  173 ccatgacaagcataattcatgaaggtcttttttacccatcaaatt 217  Q
    |||||||| |||||||||  | |||||||||||||||||||||||    
T  52351439 ccatgacaggcataattctcggaggtcttttttacccatcaaatt 52351483  T

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Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 26706652 - 26706761
Alignment:
Q  20 aagttcaacaaaaattaaattactaagaataattatccaacttggtaacgataatccttcatagttatttattgtcaagtatttgagatttgagtgaggt 119  Q
    |||||||| | ||| |||||||||||||||| ||| |||||||||||| |||||||| || ||||  ||||||  |||| | ||||||||||||||||||    
T  26706652 aagttcaagagaaactaaattactaagaatacttacccaacttggtaatgataatccgtcgtagtactttatttccaagcacttgagatttgagtgaggt 26706751  T
Q  120 tgaagcactt 129  Q
    ||||||||||    
T  26706752 tgaagcactt 26706761  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 172 - 249
Target Start/End: Original strand, 26706816 - 26706893
Alignment:
Q  172 cccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacat 249  Q
    ||||||||||||||||||  |  |||| |||||| ||||||||||| ||  ||| ||||||||||||||| |||||||    
T  26706816 cccatgacaagcataatttttcgaggttttttttccccatcaaattggcttcttgagcttcagataaactgccaacat 26706893  T

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Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 173 - 263
Target Start/End: Original strand, 7098897 - 7098987
Alignment:
Q  173 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacattgtttaatcctttg 263  Q
    ||||||||||||||||||||  ||||||||||||||||| ||||| ||  ||| |||||||||||||||||||||||| | ||| ||||||    
T  7098897 ccatgacaagcataattcatcgaggtcttttttacccattaaattggcttctttagcttcagataaactaccaacattttgtaagcctttg 7098987  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 173 - 250
Target Start/End: Complemental strand, 7582349 - 7582272
Alignment:
Q  173 ccatgacaagcataattcatgaaggtcttttttacccatcaaattagccgcttcagcttcagataaactaccaacatt 250  Q
    ||||||||||||||||||||  |||||||||||||||||||| || ||  ||| |||||||||||||||||| |||||    
T  7582349 ccatgacaagcataattcatcgaggtcttttttacccatcaagttggcttcttgagcttcagataaactaccgacatt 7582272  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 139
Target Start/End: Complemental strand, 7582432 - 7582395
Alignment:
Q  102 ttgagatttgagtgaggttgaagcacttcaagtacttg 139  Q
    |||||||||| |||||||||||||||||||||||||||    
T  7582432 ttgagatttgtgtgaggttgaagcacttcaagtacttg 7582395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 150
Target Start/End: Original strand, 7098814 - 7098862
Alignment:
Q  102 ttgagatttgagtgaggttgaagcacttcaagtacttgctcagcactga 150  Q
    ||||||||||  ||||||||||||||||||| |||||| ||| ||||||    
T  7098814 ttgagatttgtatgaggttgaagcacttcaattacttgatcatcactga 7098862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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