View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11575_low_45 (Length: 265)

Name: NF11575_low_45
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11575_low_45
NF11575_low_45
[»] chr1 (10 HSPs)
chr1 (22-256)||(44872768-44873000)
chr1 (158-251)||(37811034-37811129)
chr1 (174-251)||(44031536-44031616)
chr1 (174-251)||(28876764-28876844)
chr1 (158-251)||(19620319-19620414)
chr1 (174-251)||(51837770-51837850)
chr1 (174-234)||(28875635-28875698)
chr1 (174-234)||(51836608-51836671)
chr1 (179-256)||(21899516-21899594)
chr1 (179-256)||(44611935-44612013)
[»] chr3 (10 HSPs)
chr3 (158-251)||(30574584-30574679)
chr3 (174-251)||(6530051-6530131)
chr3 (179-256)||(19316651-19316728)
chr3 (158-251)||(43679035-43679128)
chr3 (174-251)||(6528962-6529042)
chr3 (179-256)||(19319368-19319443)
chr3 (174-251)||(30575760-30575840)
chr3 (181-250)||(44211461-44211530)
chr3 (162-215)||(14414411-14414464)
chr3 (196-253)||(41513452-41513511)
[»] chr2 (5 HSPs)
chr2 (158-251)||(44112901-44112996)
chr2 (159-215)||(25073851-25073907)
chr2 (198-251)||(4518980-4519035)
chr2 (179-256)||(3029948-3030026)
chr2 (195-256)||(19019664-19019727)
[»] chr4 (5 HSPs)
chr4 (158-244)||(56331997-56332085)
chr4 (174-251)||(30101576-30101656)
chr4 (174-234)||(48367687-48367750)
chr4 (174-251)||(30100431-30100511)
chr4 (176-215)||(50580315-50580356)
[»] chr7 (5 HSPs)
chr7 (174-251)||(15743505-15743585)
chr7 (174-234)||(15742376-15742439)
chr7 (174-244)||(29418241-29418312)
chr7 (179-256)||(40692128-40692205)
chr7 (179-219)||(41495878-41495917)
[»] chr5 (6 HSPs)
chr5 (135-219)||(43543941-43544027)
chr5 (174-251)||(41422464-41422544)
chr5 (179-236)||(41574205-41574263)
chr5 (174-244)||(14672527-14672600)
chr5 (179-256)||(15480881-15480959)
chr5 (158-190)||(40877560-40877592)
[»] chr8 (6 HSPs)
chr8 (158-251)||(13047779-13047874)
chr8 (149-215)||(8469416-8469482)
chr8 (158-215)||(32688445-32688502)
chr8 (179-256)||(30955157-30955235)
chr8 (179-256)||(30957810-30957888)
chr8 (158-215)||(13046451-13046508)
[»] chr6 (4 HSPs)
chr6 (174-251)||(29657463-29657543)
chr6 (174-234)||(1572726-1572789)
chr6 (174-234)||(1573937-1574000)
chr6 (193-253)||(30575029-30575091)
[»] scaffold0242 (4 HSPs)
scaffold0242 (179-256)||(7052-7130)
scaffold0242 (179-256)||(9356-9434)
scaffold0242 (179-256)||(11658-11736)
scaffold0242 (179-256)||(20493-20571)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 22 - 256
Target Start/End: Original strand, 44872768 - 44873000
Alignment:
Q  22 ttccatgtcttcatgttccatacagtcagtgaagcgaaacccaggttgtcaaaatagttagaaccagacctacacagacaatatggacctcataattcct 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||    
T  44872768 ttccatgtcttcatgttccatacagtcagtgaagcgaaacccaggttgtcaaaatagttagaaccagacctaca--gacaatatggacctcataattcct 44872865  T
Q  122 tgctaaaatgagtttaacagagaacacaaaattaggattattgattgaaaaggaaaatattacagaagattaacccctgtaatcccagagcaaaagcttc 221  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44872866 tgctaaaatgagtttaacagagaacagaaaattaggattattgattgaaaaggaaaatattacagaagattaacccctgtaatcccagagcaaaagcttc 44872965  T
Q  222 tgagaagagacatttttctctctgcccaaacccta 256  Q
    |||||||||||||||||||||||||||||||||||    
T  44872966 tgagaagagacatttttctctctgcccaaacccta 44873000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 251
Target Start/End: Complemental strand, 37811129 - 37811034
Alignment:
Q  158 attattgattgaaaaggaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagct--tctgagaagagacatttttctctctgcccaaa 251  Q
    ||||| |||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||  || |||||||||||||| | ||||||||||||    
T  37811129 attatagattgaaaag-aaaatattacagaagattacccctctgtaatcccagagcaaaagctcctcagagaagagacatttctgtctctgcccaaa 37811034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 44031536 - 44031616
Alignment:
Q  174 gaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaa 251  Q
    |||||||||||||||||||| ||| |||||||||||||||||||||| ||  |||||||||||||| ||||||||||||||    
T  44031536 gaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatttctctctctgcccaaa 44031616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 28876844 - 28876764
Alignment:
Q  174 gaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagct--tctgagaagagacatttttctctctgcccaaa 251  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||  || |||||||||||| | ||||||||||||||    
T  28876844 gaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatctctctctctgcccaaa 28876764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 19620319 - 19620414
Alignment:
Q  158 attattgattgaaaaggaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaa 251  Q
    |||||||||||||||| |||||||||||||||||||  || || |||| ||||||||| |||| ||  |||||||||||||| ||||||||||||||    
T  19620319 attattgattgaaaag-aaaatattacagaagattatgcctctataattccagagcaagagctcctcagagaagagacatttctctctctgcccaaa 19620414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 51837850 - 51837770
Alignment:
Q  174 gaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaa 251  Q
    ||||||||||| |||||||| ||| ||||||| |||||||||||||| ||  |||||||||||| | ||||||||||||||    
T  51837850 gaaaatattactgaagattatccctctgtaattccagagcaaaagctcctcagagaagagacatctctctctctgcccaaa 51837770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 28875698 - 28875635
Alignment:
Q  174 gaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagct--tctgagaagagacat 234  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||  || ||||||||||||    
T  28875698 gaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacat 28875635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 51836671 - 51836608
Alignment:
Q  174 gaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagct--tctgagaagagacat 234  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||  || ||||||||||||    
T  51836671 gaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacat 51836608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 21899594 - 21899516
Alignment:
Q  179 tattacagaagattaacccctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaacccta 256  Q
    ||||||||||||| || | |||||| || |||||||||||| ||  |||||||||||||| |||||||||| ||||||||    
T  21899594 tattacagaagat-aatctctgtaaccctagagcaaaagctcctcagagaagagacatttctctctctgcctaaacccta 21899516  T

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Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 44612013 - 44611935
Alignment:
Q  179 tattacagaagattaacccctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaacccta 256  Q
    ||||||||||||  ||||||||||| |||  |||||||||  ||  |||||||||||||| |||||||||| ||||||||    
T  44612013 tattacagaagaa-aacccctgtaaccccgtagcaaaagcccctcagagaagagacatttctctctctgcctaaacccta 44611935  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 30574584 - 30574679
Alignment:
Q  158 attattgattgaaaaggaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaa 251  Q
    |||||||||||||||  ||||||||||||||||||| ||| |||||||||||||||||||||| ||  |||||||||||||| ||||||||||||||    
T  30574584 attattgattgaaaat-aaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatttctctctctgcccaaa 30574679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 6530051 - 6530131
Alignment:
Q  174 gaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagct--tctgagaagagacatttttctctctgcccaaa 251  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||  || |||||||||||||| ||| ||||||||||    
T  6530051 gaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatttctctttctgcccaaa 6530131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 19316728 - 19316651
Alignment:
Q  179 tattacagaagattaacccctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaacccta 256  Q
    ||||||||||||| ||||||||||| ||||||||||||||| ||  |||||||||||||| |||||||||||||||||||    
T  19316728 tattacagaagat-aacccctgtaa-cccagagcaaaagctcctcagagaagagacatttctctctctgcccaaacccta 19316651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 251
Target Start/End: Complemental strand, 43679128 - 43679035
Alignment:
Q  158 attattgattgaaaaggaaaatattacagaagattaacccctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaa 251  Q
    |||||||||||||||| ||||||||||||||||||  || ||||||||| |||||||| ||| ||  |||||||||||||| ||||||||||||||    
T  43679128 attattgattgaaaag-aaaatattacagaagattc-cctctgtaatcctagagcaaacgctcctcagagaagagacatttctctctctgcccaaa 43679035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 6528962 - 6529042
Alignment:
Q  174 gaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagct--tctgagaagagacatttttctctctgcccaaa 251  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||  ||  ||||||||||||| ||| ||||||||||    
T  6528962 gaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcaaagaagagacatttctctttctgcccaaa 6529042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 19319443 - 19319368
Alignment:
Q  179 tattacagaagattaacccctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaacccta 256  Q
    ||||||||||||| ||||||||||| ||||||||||||||| ||  ||||||||||||||  ||||||||||||||||||    
T  19319443 tattacagaagat-aacccctgtaa-cccagagcaaaagctcctcagagaagagacattt--ctctctgcccaaacccta 19319368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 251
Target Start/End: Original strand, 30575760 - 30575840
Alignment:
Q  174 gaaaatattacagaagattaacccct-gtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaa 251  Q
    ||||||||||||||||| || ||| | ||||||||| |||||||||| ||  |||||||||||||| ||||||||||||||    
T  30575760 gaaaatattacagaagagtatccctttgtaatcccaaagcaaaagctcctcagagaagagacatttctctctctgcccaaa 30575840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 44211530 - 44211461
Alignment:
Q  181 ttacagaagattaacccctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaa 250  Q
    ||||||||||| ||||||||||| ||||||||||||||| ||  |||||||||||||| |||||||||||||    
T  44211530 ttacagaagat-aacccctgtaa-cccagagcaaaagctcctcagagaagagacatttctctctctgcccaa 44211461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 14414411 - 14414464
Alignment:
Q  162 ttgattgaaaaggaaaatattacagaagattaacccctgtaatcccagagcaaa 215  Q
    |||||||||||   || ||||||| |||||||||||||||||||||||||||||    
T  14414411 ttgattgaaaatcgaactattacataagattaacccctgtaatcccagagcaaa 14414464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 253
Target Start/End: Original strand, 41513452 - 41513511
Alignment:
Q  196 ccctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaacc 253  Q
    |||| |||||||||||||| |||| ||  ||||||| |||||| ||||||||||||||||    
T  41513452 ccctataatcccagagcaagagctccttagagaagaaacatttctctctctgcccaaacc 41513511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 44112901 - 44112996
Alignment:
Q  158 attattgattgaaaaggaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaa 251  Q
    ||||| |||||||||| ||||||||||||||||||| ||| ||||||||||||||||| |||| ||  |||||||||||||| ||||||||||||||    
T  44112901 attatagattgaaaag-aaaatattacagaagattatccctctgtaatcccagagcaacagctcctcagagaagagacatttctctctctgcccaaa 44112996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 159 - 215
Target Start/End: Original strand, 25073851 - 25073907
Alignment:
Q  159 ttattgattgaaaaggaaaatattacagaagattaacccctgtaatcccagagcaaa 215  Q
    ||||| |||||||  ||||||||||||||||||| ||||||||||||||||||||||    
T  25073851 ttattcattgaaatagaaaatattacagaagattgacccctgtaatcccagagcaaa 25073907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 251
Target Start/End: Complemental strand, 4519035 - 4518980
Alignment:
Q  198 ctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaa 251  Q
    |||||||||||||||||||||| ||  |||||||||||||| ||||||||||||||    
T  4519035 ctgtaatcccagagcaaaagctcctcagagaagagacatttctctctctgcccaaa 4518980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 3029948 - 3030026
Alignment:
Q  179 tattacagaagattaacccctgtaatcccagagcaaaagcttctgaga--agagacatttttctctctgcccaaacccta 256  Q
    ||||||||||||  ||||||||||| |||| |||||||||| || |||  |||||||||| |||||||||| ||||||||    
T  3029948 tattacagaagaa-aacccctgtaaccccatagcaaaagctcctcagataagagacatttctctctctgcctaaacccta 3030026  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 19019664 - 19019727
Alignment:
Q  195 cccctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaacccta 256  Q
    ||||||||| |||| |||||||||  ||  |||||||||||||| |||||||||| ||||||||    
T  19019664 cccctgtaaccccatagcaaaagcccctcagagaagagacatttctctctctgcctaaacccta 19019727  T

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Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 158 - 244
Target Start/End: Complemental strand, 56332085 - 56331997
Alignment:
Q  158 attattgattgaaaaggaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagct--tctgagaagagacatttttctctct 244  Q
    |||||||||||||||| ||||||||||||||||||| ||| ||||||||| ||||||||||||  || |||||||||||||| |||||||    
T  56332085 attattgattgaaaag-aaaatattacagaagattatccctctgtaatcctagagcaaaagctcctcagagaagagacatttctctctct 56331997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 30101656 - 30101576
Alignment:
Q  174 gaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaa 251  Q
    |||||||||||||||||||| ||| || ||||||||||||||||||| ||  |||||||||||| | ||||||||||||||    
T  30101656 gaaaatattacagaagattatccctctctaatcccagagcaaaagctcctcagagaagagacatctctctctctgcccaaa 30101576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 48367750 - 48367687
Alignment:
Q  174 gaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagct--tctgagaagagacat 234  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||  || ||||||||||||    
T  48367750 gaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacat 48367687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 30100511 - 30100431
Alignment:
Q  174 gaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaa 251  Q
    ||||||||||  |||||||| ||| ||||||||||| |||||||||| ||  |||||||||||| | ||||||||||||||    
T  30100511 gaaaatattatcgaagattatccctctgtaatcccaaagcaaaagctcctcagagaagagacatctctctctctgcccaaa 30100431  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 215
Target Start/End: Complemental strand, 50580356 - 50580315
Alignment:
Q  176 aaatattacagaagattaaccc--ctgtaatcccagagcaaa 215  Q
    ||||||||||||||||||||||  ||||||||||||||||||    
T  50580356 aaatattacagaagattaacccctctgtaatcccagagcaaa 50580315  T

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Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 15743585 - 15743505
Alignment:
Q  174 gaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagct--tctgagaagagacatttttctctctgcccaaa 251  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||  || |||||||||||| | ||||||||||||||    
T  15743585 gaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacatctctctctctgcccaaa 15743505  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 15742439 - 15742376
Alignment:
Q  174 gaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagct--tctgagaagagacat 234  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||  || ||||||||||||    
T  15742439 gaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacat 15742376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 244
Target Start/End: Original strand, 29418241 - 29418312
Alignment:
Q  174 gaaaatattacagaagattaacccctgtaatcccagagcaaaagct--tctgagaagagacatttttctctct 244  Q
    |||||||||||||||||||  || ||||||||| ||||||||||||  || |||||||||||||| |||||||    
T  29418241 gaaaatattacagaagatt-ccctctgtaatcctagagcaaaagctcctcagagaagagacatttctctctct 29418312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 40692205 - 40692128
Alignment:
Q  179 tattacagaagattaacccctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaacccta 256  Q
    ||||||||||||  ||||||||||  ||||||||||||||| ||  |||||||||||||| |||||||||| ||||||||    
T  40692205 tattacagaagaa-aacccctgtac-cccagagcaaaagctcctcagagaagagacatttctctctctgcctaaacccta 40692128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 41495917 - 41495878
Alignment:
Q  179 tattacagaagattaacccctgtaatcccagagcaaaagct 219  Q
    ||||||||||||| ||||||||||| |||||||||||||||    
T  41495917 tattacagaagat-aacccctgtaaccccagagcaaaagct 41495878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 219
Target Start/End: Original strand, 43543941 - 43544027
Alignment:
Q  135 ttaacagagaacacaaaattaggattattgattgaaaaggaaaata--ttacagaagattaacccctgtaatcccagagcaaaagct 219  Q
    ||||||||||||| ||||  || |||||||||||||||  ||||||  || |||||||||||||||| |||||||||||||||||||    
T  43543941 ttaacagagaacataaaacaagtattattgattgaaaaaaaaaatacattgcagaagattaacccctataatcccagagcaaaagct 43544027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 41422544 - 41422464
Alignment:
Q  174 gaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaa 251  Q
    ||||||||||| |||||||| ||| || ||||||||||||||||||| ||  |||||||||||| | ||||||||||||||    
T  41422544 gaaaatattaccgaagattatccctctataatcccagagcaaaagctcctcagagaagagacatctctctctctgcccaaa 41422464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 236
Target Start/End: Original strand, 41574205 - 41574263
Alignment:
Q  179 tattacagaagattaacccctgtaatcccagagcaaaagct--tctgagaagagacattt 236  Q
    ||||||||||||| ||||||||||| |||||||||||||||  || ||||||||||||||    
T  41574205 tattacagaagat-aacccctgtaaccccagagcaaaagctcctcagagaagagacattt 41574263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 244
Target Start/End: Complemental strand, 14672600 - 14672527
Alignment:
Q  174 gaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagct--tctgagaagagacatttttctctct 244  Q
    ||||||||||| |||||||| ||| ||||||||||| ||||||||||  || |||||||||||| | |||||||    
T  14672600 gaaaatattaccgaagattatccctctgtaatcccaaagcaaaagctcctcagagaagagacatctctctctct 14672527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 15480881 - 15480959
Alignment:
Q  179 tattacagaagattaacccctgtaatcccagagcaaaagcttctga--gaagagacatttttctctctgcccaaacccta 256  Q
    ||||||||||||| ||||||||||| ||| |||||||| || || |  |||||||||||  |||||| ||||||||||||    
T  15480881 tattacagaagat-aacccctgtaacccctgagcaaaaactcctcatagaagagacattcctctctcggcccaaacccta 15480959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 40877592 - 40877560
Alignment:
Q  158 attattgattgaaaaggaaaatattacagaaga 190  Q
    ||||||||||||||||| |||||||||||||||    
T  40877592 attattgattgaaaagggaaatattacagaaga 40877560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 251
Target Start/End: Complemental strand, 13047874 - 13047779
Alignment:
Q  158 attattgattgaaaaggaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagct--tctgagaagagacatttttctctctgcccaaa 251  Q
    |||| ||||||||||| ||||||||||||||||||| ||| || ||||||||||||||| |||  || ||||||||||| || | ||||||||||||    
T  13047874 attactgattgaaaag-aaaatattacagaagattatccctctataatcccagagcaaaggctcctcagagaagagacacttctttctctgcccaaa 13047779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 215
Target Start/End: Original strand, 8469416 - 8469482
Alignment:
Q  149 aaaattaggattattgattgaaaaggaaaatattacagaagattaacccctgtaatcccagagcaaa 215  Q
    |||| ||| ||||||| |||||||  || |||||| |||| ||||||||||||||||||||||||||    
T  8469416 aaaactagtattattggttgaaaacaaatatattatagaaaattaacccctgtaatcccagagcaaa 8469482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 158 - 215
Target Start/End: Original strand, 32688445 - 32688502
Alignment:
Q  158 attattgattgaaaaggaaaatattacagaagattaacccctgtaatcccagagcaaa 215  Q
    |||||| ||||||||| |||||||||||| || | |||||||| ||||||||||||||    
T  32688445 attattaattgaaaagtaaaatattacagtagttcaacccctgcaatcccagagcaaa 32688502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 30955157 - 30955235
Alignment:
Q  179 tattacagaagattaacccctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaacccta 256  Q
    ||||||||||||| || | |||||| || |||||||||||| ||  |||||||||||||| |||||||||| ||||||||    
T  30955157 tattacagaagat-aatctctgtaaccctagagcaaaagctcctcagagaagagacatttctctctctgcctaaacccta 30955235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 30957810 - 30957888
Alignment:
Q  179 tattacagaagattaacccctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaacccta 256  Q
    ||||||||||||| || | |||||| || |||||||||||| ||  |||||||||||||| |||||||||| ||||||||    
T  30957810 tattacagaagat-aatctctgtaaccctagagcaaaagctcctcagagaagagacatttctctctctgcctaaacccta 30957888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 215
Target Start/End: Complemental strand, 13046508 - 13046451
Alignment:
Q  158 attattgattgaaaaggaaaatattacagaagattaaccc-ctgtaatcccagagcaaa 215  Q
    |||| ||||||||||| ||||||||||||||||||| ||| ||||||| ||||||||||    
T  13046508 attactgattgaaaag-aaaatattacagaagattatccctctgtaattccagagcaaa 13046451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 251
Target Start/End: Complemental strand, 29657543 - 29657463
Alignment:
Q  174 gaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaa 251  Q
    ||||||||||| |||||||| ||| ||||||||||| |||||||||| ||  |||||||||||| | ||||||||||||||    
T  29657543 gaaaatattaccgaagattatccctctgtaatcccaaagcaaaagctcctcagagaagagacatctctctctctgcccaaa 29657463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 1572726 - 1572789
Alignment:
Q  174 gaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagct--tctgagaagagacat 234  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||  || ||||||||||||    
T  1572726 gaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacat 1572789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 1573937 - 1574000
Alignment:
Q  174 gaaaatattacagaagattaaccc-ctgtaatcccagagcaaaagct--tctgagaagagacat 234  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||  || ||||||||||||    
T  1573937 gaaaatattacagaagattatccctctgtaatcccagagcaaaagctcctcagagaagagacat 1574000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 253
Target Start/End: Original strand, 30575029 - 30575091
Alignment:
Q  193 aacccctgtaatcccagagcaaaagct--tctgagaagagacatttttctctctgcccaaacc 253  Q
    ||||||||||| |||||||||||||||  || |||||||||||||| |||||||||| |||||    
T  30575029 aacccctgtaaccccagagcaaaagctcctcagagaagagacatttctctctctgcctaaacc 30575091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 37; Significance: 0.000000000006; HSPs: 4)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 7130 - 7052
Alignment:
Q  179 tattacagaagattaacccctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaacccta 256  Q
    ||||||||||||  | ||||||||| ||||||||||||||| ||  ||||| |||||||| |||||||||||||||||||    
T  7130 tattacagaagaaaaccccctgtaa-cccagagcaaaagctcctcagagaaaagacatttctctctctgcccaaacccta 7052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 9434 - 9356
Alignment:
Q  179 tattacagaagattaacccctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaacccta 256  Q
    ||||||||||||  | ||||||||| ||||||||||||||| ||  ||||| |||||||| |||||||||||||||||||    
T  9434 tattacagaagaaaaccccctgtaa-cccagagcaaaagctcctcagagaaaagacatttctctctctgcccaaacccta 9356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 11736 - 11658
Alignment:
Q  179 tattacagaagattaacccctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaacccta 256  Q
    ||||||||||||  | ||||||||| ||||||||||||||| ||  |||||||||||||| |||||||||| ||||||||    
T  11736 tattacagaagaaaaccccctgtaa-cccagagcaaaagctcctcagagaagagacatttctctctctgcctaaacccta 11658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 179 - 256
Target Start/End: Complemental strand, 20571 - 20493
Alignment:
Q  179 tattacagaagattaacccctgtaatcccagagcaaaagcttct--gagaagagacatttttctctctgcccaaacccta 256  Q
    ||||||||||||  | ||||||||| ||||||||||||||| ||  |||||||||||||| |||||||||| ||||||||    
T  20571 tattacagaagaaaaccccctgtaa-cccagagcaaaagctcctcagagaagagacatttctctctctgcctaaacccta 20493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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