View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_low_47 (Length: 260)
Name: NF11575_low_47
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 9 - 242
Target Start/End: Original strand, 18820023 - 18820255
Alignment:
| Q |
9 |
aacataagttacaatctcaagataggaagaggaacacagcatgaacaggaagaggaacagaagttaaaaatgcaacaaaaacacagcatgaacagaagct |
108 |
Q |
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| T |
18820023 |
aacagaagttacaatctcaagataggaagaggaacacagcatgaacaggaagaggaacagaagttaaaaacgcagcaaaaacacatcatgaacagaagct |
18820122 |
T |
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| Q |
109 |
aaaaactccaagatctgagagttctgttgaggtggtggtggtgaatgatctgatgtggtgttggtggtttttgattcagcaccggtgttgaaaaagaatc |
208 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
18820123 |
aaaaa-tccaagatctgagagttctgttgaggtggtggtggtgaatgaactgatgtggtgttggtggtttttgattcggcaccggtgttgaaaaagagtc |
18820221 |
T |
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| Q |
209 |
tgagattgctgaaaaagttagtgaggctgtgaag |
242 |
Q |
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||||||||||||||||||||||||||| |||||| |
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| T |
18820222 |
tgagattgctgaaaaagttagtgaggccgtgaag |
18820255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 35 - 242
Target Start/End: Original strand, 44231159 - 44231366
Alignment:
| Q |
35 |
aagaggaacacagcatgaacaggaagaggaacagaagttaaaaatgcaacaaaaacacagcatgaacagaagctaaaaactccaagatctgagagttctg |
134 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44231159 |
aagaggaacacaacatgaacaggaagaggaacagaagttaaaaacgcaacaaaaacacagcatgaacagaagctaaaaactccaagatctgagagttctg |
44231258 |
T |
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| Q |
135 |
ttgaggtggtggtggtgaatgatctgatgtggtgttggtggtttttgattcagcaccggtgttgaaaaagaatctgagattgctgaaaaagttagtgagg |
234 |
Q |
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| T |
44231259 |
ttgaggtggtggtggtgaatgatctgacgtggtgttggtggtttttgattcggcaccggtgttgaaaaagaatctcagattgctgaaaaagttagtgagg |
44231358 |
T |
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| Q |
235 |
ctgtgaag |
242 |
Q |
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|||||||| |
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| T |
44231359 |
ctgtgaag |
44231366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 35 - 242
Target Start/End: Complemental strand, 29478583 - 29478376
Alignment:
| Q |
35 |
aagaggaacacagcatgaacaggaagaggaacagaagttaaaaatgcaacaaaaacacagcatgaacagaagctaaaaactccaagatctgagagttctg |
134 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29478583 |
aagaggaacacaacatgaacaggaagaggaacagaagttaaaaacgcaacaaaaacacagcatgaacagaagctaaaaactccaagatctgagagttctg |
29478484 |
T |
|
| Q |
135 |
ttgaggtggtggtggtgaatgatctgatgtggtgttggtggtttttgattcagcaccggtgttgaaaaagaatctgagattgctgaaaaagttagtgagg |
234 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29478483 |
tttaggtggtggtggtgaatgatctgatgtggtgttggtggtttgtgattcggcatcggtgttgaaaaagaatctgagattgctgaaaaagttagtgagg |
29478384 |
T |
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| Q |
235 |
ctgtgaag |
242 |
Q |
| |
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|||||||| |
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|
| T |
29478383 |
ctgtgaag |
29478376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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