View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11575_low_51 (Length: 245)

Name: NF11575_low_51
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11575_low_51
NF11575_low_51
[»] chr4 (15 HSPs)
chr4 (19-230)||(3749375-3749586)
chr4 (32-230)||(5858500-5858698)
chr4 (32-228)||(5582905-5583101)
chr4 (34-230)||(5847705-5847901)
chr4 (34-230)||(5885920-5886116)
chr4 (34-223)||(5894772-5894961)
chr4 (34-218)||(5570708-5570892)
chr4 (33-214)||(5565237-5565418)
chr4 (34-214)||(5605556-5605736)
chr4 (34-229)||(5553647-5553842)
chr4 (32-230)||(5559445-5559643)
chr4 (34-228)||(5852581-5852775)
chr4 (33-230)||(5538833-5539030)
chr4 (117-230)||(5613627-5613740)
chr4 (166-230)||(251993-252057)
[»] chr8 (1 HSPs)
chr8 (45-230)||(1485703-1485888)
[»] scaffold0454 (1 HSPs)
scaffold0454 (45-230)||(884-1070)


Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 230
Target Start/End: Original strand, 3749375 - 3749586
Alignment:
Q  19 caattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgact 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3749375 caattcacaaagcgcaagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgact 3749474  T
Q  119 gataggttctctagtcttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3749475 gataggttctctagtcttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcttgcaagtcacgcaacggcaacaaagcat 3749574  T
Q  219 tgctcaattcat 230  Q
    ||||||||||||    
T  3749575 tgctcaattcat 3749586  T

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Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 32 - 230
Target Start/End: Original strand, 5858500 - 5858698
Alignment:
Q  32 gcaagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctcta 131  Q
    |||||||||||||| ||||||||||||||||| ||||||||||  || ||||| |||||||||| |||| ||||||||||||||||||||||||||||||    
T  5858500 gcaagactgagggtagtcaagtttttaaaatttgcaaatgtttcaggaactggggatgaaaaatagttctcatcaagaataatgactgataggttctcta 5858599  T
Q  132 gtcttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat 230  Q
    || |||||||||||||||||||||| ||| ||| | ||||| |||||||||||||||| || | ||  ||||||||||||||||||||| || ||||||    
T  5858600 gttttgttagggaagaatcaaggggacctaatagaccacaggaagacatgctcaattcttgtaggtttcgcaacggcaacaaagcattgatccattcat 5858698  T

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Target: chr4; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 32 - 228
Target Start/End: Complemental strand, 5583101 - 5582905
Alignment:
Q  32 gcaagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctcta 131  Q
    ||||||||||||||||| || ||||| ||||||| ||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  5583101 gcaagactgagggtggttaattttttgaaattggaaaatgtttgtggcactggggatgaaaaattgttcccatcaagaataatgactgataggttcttta 5583002  T
Q  132 gtcttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattc 228  Q
    ||||||||||||||||||||||||| ||||||| |||||| |||||||| |||||| | || | || | |||  |||||||||||||| ||| ||||    
T  5583001 gtcttgttagggaagaatcaaggggacctgatagatcacaataagacatactcaatacttggaggttaggcaggggcaacaaagcattcctccattc 5582905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 5847901 - 5847705
Alignment:
Q  34 aagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagt 133  Q
    |||| |||||||||| | |||||||||||||||||||||||  |||||||| |||||||| |||||| || |||||| |||||| |  ||||||||||||    
T  5847901 aagattgagggtggttaggtttttaaaattggcaaatgtttgtggcactggggatgaaaagttgttctcaccaagaacaatgaccgtcaggttctctagt 5847802  T
Q  134 cttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat 230  Q
    ||||||||||||||||||||||||||||||| |||||| | |||||||||||| |  |||| ||||||||| |||||||||||||||||| ||||||    
T  5847801 cttgttagggaagaatcaaggggtcctgatagatcacaatcagacatgctcaacttttgcaggtcacgcaaaggcaacaaagcattgctccattcat 5847705  T

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Target: chr4; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 34 - 230
Target Start/End: Complemental strand, 5886116 - 5885920
Alignment:
Q  34 aagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagt 133  Q
    |||| |||||||||| | |||||||||||||||||||||||  |||||||| ||||||||||||||| |  ||||||||||||| |||||||||||||||    
T  5886116 aagattgagggtggttaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattgttctcgccaagaataatgaccgataggttctctagt 5886017  T
Q  134 cttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat 230  Q
     |||  ||||| ||||||||||||||||||| |  ||||| | |||||||||| || ||||||||||||| ||| ||||||||||| ||| ||||||    
T  5886016 tttgaaagggaggaatcaaggggtcctgatagactacagttatacatgctcaactcttgcaagtcacgcagcggtaacaaagcattactccattcat 5885920  T

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Target: chr4; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 34 - 223
Target Start/End: Complemental strand, 5894961 - 5894772
Alignment:
Q  34 aagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagt 133  Q
    |||| |||||||||| | |||||||||||||||||||||||  |||| ||  |||||||||||||| | || ||||||||||||||| ||||||| ||||    
T  5894961 aagattgagggtggttaggtttttaaaattggcaaatgtttctggcaatgaggatgaaaaattgtttcgataaagaataatgactgacaggttctgtagt 5894862  T
Q  134 cttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctc 223  Q
    |||| ||||||||||||||||| |||||| |||||||| | ||||||||||||||| || | ||||||||| || | |||||||||||||    
T  5894861 cttgatagggaagaatcaagggatcctgacaaatcacaattagacatgctcaattcttgtaggtcacgcaaaggtatcaaagcattgctc 5894772  T

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Target: chr4; HSP #7
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 34 - 218
Target Start/End: Complemental strand, 5570892 - 5570708
Alignment:
Q  34 aagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagt 133  Q
    ||||||||||||||| |  ||||||||||||| ||||||||  |||||| | ||||| |||| |||||||||||||||||||||||||||||||| ||||    
T  5570892 aagactgagggtggttagttttttaaaattggaaaatgtttctggcactagggatgagaaatagttcccatcaagaataatgactgataggttctttagt 5570793  T
Q  134 cttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcat 218  Q
    |||||||||||||||  |||||||||||||| |||||| |||||||| |||||| | || | || ||||| ||| ||||||||||    
T  5570792 cttgttagggaagaagaaaggggtcctgatagatcacaataagacatactcaatacttggaggttacgcagcggaaacaaagcat 5570708  T

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Target: chr4; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 33 - 214
Target Start/End: Original strand, 5565237 - 5565418
Alignment:
Q  33 caagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctag 132  Q
    |||||||||||||||||| |||||||||||||||||||||||  |||||||| ||||||||||| ||  || ||||||||||||||||||||||||||||    
T  5565237 caagactgagggtggtcaggtttttaaaattggcaaatgtttgtggcactggggatgaaaaattattgtcaccaagaataatgactgataggttctctag 5565336  T
Q  133 tcttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaa 214  Q
    | |||  ||||||||||||||||||||||| | | |||||   |||||||  ||||| || | |||||| ||||||||||||    
T  5565337 ttttgaaagggaagaatcaaggggtcctgaaagaccacagcttgacatgcctaattcttgtaggtcacggaacggcaacaaa 5565418  T

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Target: chr4; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 34 - 214
Target Start/End: Original strand, 5605556 - 5605736
Alignment:
Q  34 aagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagt 133  Q
    |||| |||||||||| | |||||||||||||||||||||||  |||||||| ||||||||||||||||||||||||| |||||| |||| ||||||||      
T  5605556 aagattgagggtggttaggtttttaaaattggcaaatgtttctggcactggggatgaaaaattgttcccatcaagaagaatgacagataagttctctaac 5605655  T
Q  134 cttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaa 214  Q
    |||| |||||||||||||||||||||||| ||| ||||||  ||||| |  ||||| || | |||||| | ||||||||||    
T  5605656 cttgctagggaagaatcaaggggtcctgaaaaaccacagtctgacatacctaattcttgtaggtcacggagcggcaacaaa 5605736  T

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Target: chr4; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 34 - 229
Target Start/End: Original strand, 5553647 - 5553842
Alignment:
Q  34 aagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagt 133  Q
    |||||| |||||||||| ||||| |||||||||||||||||  || || || || ||||||||||||| ||||||||||||||| |||||||| | ||||    
T  5553647 aagactaagggtggtcaggttttgaaaattggcaaatgtttctggaacgggggaagaaaaattgttcctatcaagaataatgaccgataggttttttagt 5553746  T
Q  134 cttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattca 229  Q
     ||| |||||||||||| || || |||| || |||||||| | |||||||||| || || |  |||| || ||||||||||||||||||| |||||    
T  5553747 tttgatagggaagaatctagtggccctgctagatcacagttatacatgctcaactcttgtagttcacacagcggcaacaaagcattgctccattca 5553842  T

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Target: chr4; HSP #11
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 32 - 230
Target Start/End: Original strand, 5559445 - 5559643
Alignment:
Q  32 gcaagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctcta 131  Q
    |||||||| ||||| ||||| ||| | ||||||| ||||||||  ||||| || || ||||||||||| ||||||||||||||||  ||||  |||| ||    
T  5559445 gcaagactaagggttgtcaaatttctgaaattggaaaatgtttcaggcaccggggaagaaaaattgtttccatcaagaataatgatcgataaattcttta 5559544  T
Q  132 gtcttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat 230  Q
    ||||||  || || |||||||||||||||| |||||  |||| ||||||| ||| ||| |  |   |||||||||||||||||||||||||| ||||||    
T  5559545 gtcttgacagagatgaatcaaggggtcctgttaaattgcagttagacatggtcagttcttctagaccacgcaacggcaacaaagcattgctccattcat 5559643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 34 - 228
Target Start/End: Complemental strand, 5852775 - 5852581
Alignment:
Q  34 aagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagt 133  Q
    |||||| |||||||||| ||||| |||||| ||||||||||  || || || || ||||||||||||| |||||||||||||||||||||||||  ||||    
T  5852775 aagactaagggtggtcaggttttgaaaattagcaaatgtttctggaacgggggaagaaaaattgttcctatcaagaataatgactgataggttccttagt 5852676  T
Q  134 cttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattc 228  Q
     ||| ||||||||||||||| || |||| || |||||| | | ||| ||||||    || |  |||||||  |||||||||||||||||| ||||    
T  5852675 tttgatagggaagaatcaagtggccctgctagatcacatttatacaagctcaacatttgtagttcacgcagtggcaacaaagcattgctccattc 5852581  T

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Target: chr4; HSP #13
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 230
Target Start/End: Complemental strand, 5539030 - 5538833
Alignment:
Q  33 caagactgagggtggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctag 132  Q
    ||||||| ||||| ||||| ||| | ||||||| ||||||||  |||||||| || ||||||||||| ||||| ||||||||||  ||||| ||||||||    
T  5539030 caagactaagggtagtcaaatttctgaaattggaaaatgtttcaggcactggggaagaaaaattgtttccatcgagaataatgatcgatagattctctag 5538931  T
Q  133 tcttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat 230  Q
    |||||  || || || ||||| ||||||| ||||| ||||| ||||||| ||| ||| |  |   || | ||||||||||||||||||||| ||||||    
T  5538930 tcttgacagagatgattcaagaggtcctgttaaattacagttagacatggtcagttcttctagaccatgtaacggcaacaaagcattgctccattcat 5538833  T

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Target: chr4; HSP #14
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 230
Target Start/End: Original strand, 5613627 - 5613740
Alignment:
Q  117 ctgataggttctctagtcttgttagggaagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagc 216  Q
    ||||||||||||||||| |||  |||||||||||||| |||||||||| || ||||| ||||||||||| ||| || | ||| | ||| |||||||||||    
T  5613627 ctgataggttctctagttttgaaagggaagaatcaagaggtcctgatagattacagttagacatgctcagttcttgtaggtcgctcaaaggcaacaaagc 5613726  T
Q  217 attgctcaattcat 230  Q
    |||| || ||||||    
T  5613727 attgatccattcat 5613740  T

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Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 230
Target Start/End: Complemental strand, 252057 - 251993
Alignment:
Q  166 atcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat 230  Q
    |||||||| |||||||||||| || ||||  |||| || ||||||||||||||||| | ||||||    
T  252057 atcacagttagacatgctcaactcttgcagatcacacagcggcaacaaagcattgccccattcat 251993  T

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Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 230
Target Start/End: Original strand, 1485703 - 1485888
Alignment:
Q  45 tggtcaagtttttaaaattggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttaggga 144  Q
    |||||| |||||||||||||| ||||||||  || | ||| ||||||| |||||||  ||||||||||||||  | ||||||||||||| |||  |||||    
T  1485703 tggtcaggtttttaaaattggtaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatgatggttaggttctctagttttgaaaggga 1485802  T
Q  145 agaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat 230  Q
     ||||||| ||||||||||| |  ||| |    |||||||||  | ||||  ||||||| ||||||||| ||||||||| ||||||    
T  1485803 ggaatcaacgggtcctgatagactacaattgctcatgctcaacacttgcagctcacgcagcggcaacaaggcattgctccattcat 1485888  T

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Target: scaffold0454 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0454
Description:

Target: scaffold0454; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 230
Target Start/End: Original strand, 884 - 1070
Alignment:
Q  45 tggtcaagtttttaaaatt-ggcaaatgttttcggcactggtgatgaaaaattgttcccatcaagaataatgactgataggttctctagtcttgttaggg 143  Q
    |||||| |||||||||||| || ||||||||  || | ||| ||||||| |||||||  ||||||||||||||  | ||||||||||||| |||  ||||    
T  884 tggtcaggtttttaaaattaggtaaatgtttctggaattggcgatgaaagattgttcttatcaagaataatgatggttaggttctctagttttgaaaggg 983  T
Q  144 aagaatcaaggggtcctgataaatcacagtaagacatgctcaattcctgcaagtcacgcaacggcaacaaagcattgctcaattcat 230  Q
    | ||||||| ||||||||||| |  ||| |    |||||||||  | ||||  ||||||| ||||||||| ||||||||| ||||||    
T  984 aggaatcaacgggtcctgatagactacaattgctcatgctcaacacttgcagctcacgcagcggcaacaaggcattgctccattcat 1070  T

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