View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_low_53 (Length: 240)
Name: NF11575_low_53
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_low_53 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 22139890 - 22139668
Alignment:
| Q |
18 |
tacagtgtgtgtatagacacacatttgaaactcttatataaggaagagttttcttctgcagcattttattatccatttgaattagttttcagctcccagt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22139890 |
tacagtgtgtgtatagacacacatttgaaactcttatataaggaagagttttcttctgcagcattttattatccatttgaattagttttcagctctcagt |
22139791 |
T |
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| Q |
118 |
agatatggcatcagcatatgcagaatcaaatccacttatatcttctgatcatgtcaaggatgctgtcaccaagttcggtatgatatttatttcttatttt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
22139790 |
agatatggcatcagcatatgcagaatcaaatccacttatatcttctgatcatgtcaaggctgctgtcaccgagttcggtatgatatttatttcttatttt |
22139691 |
T |
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| Q |
218 |
tcttcagaaactaactatggatt |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
22139690 |
tcttcagaaactaactatggatt |
22139668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 18940612 - 18940834
Alignment:
| Q |
18 |
tacagtgtgtgtatagacacacatttgaaactcttatataaggaagagttttcttctgcagcattttattatccatttgaattagttttcagctcccagt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18940612 |
tacagtgtgtgtatagacacacatttgaaactcttatataaggaagagttttctcctgcagcattttattatccatttgaattagttttcagctcccagt |
18940711 |
T |
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| Q |
118 |
agatatggcatcagcatatgcagaatcaaatccacttatatcttctgatcatgtcaaggatgctgtcaccaagttcggtatgatatttatttcttatttt |
217 |
Q |
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| T |
18940712 |
agatatggcatcagcatatgcagaatcaagtccacttatatcttccgatcatgtcaaggctgctgtcaccgagttcggtatgatatttatttcttatttt |
18940811 |
T |
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| Q |
218 |
tcttcagaaactaactatggatt |
240 |
Q |
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|||||| |||||||||||||||| |
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| T |
18940812 |
tcttcaaaaactaactatggatt |
18940834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 21965967 - 21965745
Alignment:
| Q |
18 |
tacagtgtgtgtatagacacacatttgaaactcttatataaggaagagttttcttctgcagcattttattatccatttgaattagttttcagctcccagt |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21965967 |
tacagtgtgtgtatagacacacatttgaaactcttatataaggaagagttttctcctgcagcattttattatccatttgaattagtattcagctcccagt |
21965868 |
T |
|
| Q |
118 |
agatatggcatcagcatatgcagaatcaaatccacttatatcttctgatcatgtcaaggatgctgtcaccaagttcggtatgatatttatttcttatttt |
217 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| || ||||||||||||||||||||||||||||| |
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| T |
21965867 |
agatatggcatcagcatatgcagaatcaagtccacttatatcttctgatggtgtcaaggctgctgtctccgagttcggtatgatatttatttcttatttt |
21965768 |
T |
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| Q |
218 |
tcttcagaaactaactatggatt |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
21965767 |
tcttcagaaactaactatggatt |
21965745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 21988403 - 21988181
Alignment:
| Q |
18 |
tacagtgtgtgtatagacacacatttgaaactcttatataaggaagagttttcttctgcagcattttattatccatttgaattagttttcagctcccagt |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
21988403 |
tacagtgtgtgtatagacacacatttgaaactcttatataaggaagagttttctcctgcagcattttattatccatttgaattagtattcagctcccagt |
21988304 |
T |
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| Q |
118 |
agatatggcatcagcatatgcagaatcaaatccacttatatcttctgatcatgtcaaggatgctgtcaccaagttcggtatgatatttatttcttatttt |
217 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||| || ||||||||||||||||||||||||||||| |
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| T |
21988303 |
agatatggcatcagcatatgcagaatcaagtccacttatatcttctgatggtgtcaaggctgctgtctccgagttcggtatgatatttatttcttatttt |
21988204 |
T |
|
| Q |
218 |
tcttcagaaactaactatggatt |
240 |
Q |
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||||||||||||||||||||||| |
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| T |
21988203 |
tcttcagaaactaactatggatt |
21988181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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