View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_low_56 (Length: 239)
Name: NF11575_low_56
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_low_56 |
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Alignment Details
Target: chr3 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 57 - 117
Target Start/End: Complemental strand, 42113306 - 42113246
Alignment:
| Q |
57 |
gtagtatctacataaatcattgataattaagattaccccacaaaaagatgttggatggtgg |
117 |
Q |
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| T |
42113306 |
gtagtatctacataaatcattgataattaagattaccacacaaaaagatgttggatggtgg |
42113246 |
T |
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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 42113149 - 42113104
Alignment:
| Q |
194 |
agagagagtgaggttaagcatgggagatgaataagaaagttgttat |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42113149 |
agagagagtgaggttaagcatgggagatgaataagaaagttgttat |
42113104 |
T |
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