View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_low_57 (Length: 233)
Name: NF11575_low_57
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_low_57 |
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Alignment Details
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 23026383 - 23026598
Alignment:
| Q |
1 |
ataatgtaattaatgttaccttttaggtaaacaatgctgcaaaacctaccagtaagaaaataatagataatactgatgaagatataaacactacattggg |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23026383 |
ataatgtatataatgttaccttttaggtaaacaatgctgcaaaacctaccagtaagaaaataatagataatactgatgaagatataaacactacattggg |
23026482 |
T |
|
| Q |
101 |
tacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatggaagcatagtgttcacttcttccgttgcaggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
23026483 |
tacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaacaatctggatatggaagcatagtgttcacttcttccgttgcaggt |
23026582 |
T |
|
| Q |
201 |
ttaaaagctattcctg |
216 |
Q |
| |
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|||||||||||||||| |
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| T |
23026583 |
ttaaaagctattcctg |
23026598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 23035197 - 23035402
Alignment:
| Q |
11 |
taatgttaccttttaggtaaacaatgctgcaaaacctaccagtaagaaaataatagataatactgatgaagatataaacactacattgggtacaaatttt |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23035197 |
taatgttaccttttaggtaaacaatgctgcaaaacctacaagtaagaaaataatagataatactgatgaagatataaacactacattgggtacaaatttt |
23035296 |
T |
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| Q |
111 |
gtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatggaagcatagtgttcacttcttccgttgcaggtttaaaagcta |
210 |
Q |
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| T |
23035297 |
gtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaacaatctggatatggaagcatagtgttcacttcttccgttgcaggtttaaaagcta |
23035396 |
T |
|
| Q |
211 |
ttcctg |
216 |
Q |
| |
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|||||| |
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| T |
23035397 |
ttcctg |
23035402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 208
Target Start/End: Original strand, 23057732 - 23057917
Alignment:
| Q |
23 |
ttaggtaaacaatgctgcaaaacctaccagtaagaaaataatagataatactgatgaagatataaacactacattgggtacaaattttgtgtctggttac |
122 |
Q |
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|||||||||||||||||| | | ||| |||||||||| |||| |||||| |||||||||| |||||| ||||||||||||||| |||||||||| |
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| T |
23057732 |
ttaggtaaacaatgctgccacatgtacacataagaaaatactagagtatactgctgaagatatagtaactacaatgggtacaaattttgagtctggttac |
23057831 |
T |
|
| Q |
123 |
catttgtgtcaacttgcacatcctcttctaaaagaatctggttatggaagcatagtgttcacttcttccgttgcaggtttaaaagc |
208 |
Q |
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| T |
23057832 |
catctttgtcaactagcatacccacttctaaaagaatctggatatggaagcatagtgttcatatcttctgttggaggtttaaaagc |
23057917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 70 - 178
Target Start/End: Original strand, 23091940 - 23092048
Alignment:
| Q |
70 |
atactgatgaagatataaacactacattgggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatgg |
169 |
Q |
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||||||||||||||||| ||||| | ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
23091940 |
atactgatgaagatatagcatctacaattggtaccaattttgtgtctagttaccatttgtgtcaacttgcacatcctcttctaaaacaatctggatatgg |
23092039 |
T |
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| Q |
170 |
aagcatagt |
178 |
Q |
| |
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||||||||| |
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| T |
23092040 |
aagcatagt |
23092048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 70 - 175
Target Start/End: Original strand, 23081042 - 23081147
Alignment:
| Q |
70 |
atactgatgaagatataaacactacattgggtacaaattttgtgtctggttaccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatgg |
169 |
Q |
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|||||||||||||||||| |||||| | ||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||| |||| |
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| T |
23081042 |
atactgatgaagatataacaactacaattggtaccaattttgtgtctggttatcatttgtgtcaacttgcacaccctcttctaaaacaatctggaaatgg |
23081141 |
T |
|
| Q |
170 |
aagcat |
175 |
Q |
| |
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|||||| |
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|
| T |
23081142 |
aagcat |
23081147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 118 - 175
Target Start/End: Original strand, 23069175 - 23069232
Alignment:
| Q |
118 |
gttaccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatggaagcat |
175 |
Q |
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||||||||||||||||||||||||| || ||| ||||||||||||| ||||| ||||| |
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| T |
23069175 |
gttaccatttgtgtcaacttgcacacccacttttaaaagaatctggatatgggagcat |
23069232 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 122 - 200
Target Start/End: Original strand, 30790306 - 30790384
Alignment:
| Q |
122 |
ccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatggaagcatagtgttcacttcttccgttgcaggt |
200 |
Q |
| |
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|||| |||| |||||| ||||||||||||||||||||||||| |||| ||||| ||||||| ||| || ||||||||| |
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| T |
30790306 |
ccatctgtgccaactttcacatcctcttctaaaagaatctggaaatggtagcattgtgttcatttcatctgttgcaggt |
30790384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 30706279 - 30706202
Alignment:
| Q |
120 |
taccatttgtgtcaacttgcacatcctcttctaaaagaatctggttatggaagcatagtgttcacttcttccgttgca |
197 |
Q |
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|||||| | |||||||| ||| |||||||||| ||||||||||| |||||||||| ||||||| ||| || |||||| |
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| T |
30706279 |
taccatctatgtcaactagcatatcctcttcttaaagaatctggaaatggaagcattgtgttcatttcctctgttgca |
30706202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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