View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11575_low_6 (Length: 569)

Name: NF11575_low_6
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11575_low_6
NF11575_low_6
[»] chr4 (9 HSPs)
chr4 (18-561)||(15209187-15209753)
chr4 (315-561)||(15214843-15215089)
chr4 (315-426)||(4528448-4528559)
chr4 (452-507)||(4528366-4528421)
chr4 (248-300)||(23201711-23201763)
chr4 (248-299)||(4528586-4528637)
chr4 (248-297)||(55465702-55465751)
chr4 (254-298)||(41396597-41396641)
chr4 (248-298)||(44742547-44742597)
[»] chr3 (7 HSPs)
chr3 (315-559)||(25704854-25705098)
chr3 (317-391)||(8100266-8100340)
chr3 (248-299)||(25704777-25704828)
chr3 (248-299)||(8100368-8100419)
chr3 (254-293)||(46104992-46105031)
chr3 (202-230)||(1208363-1208391)
chr3 (254-290)||(25163929-25163965)
[»] chr1 (6 HSPs)
chr1 (315-428)||(32603225-32603339)
chr1 (316-392)||(6249797-6249873)
chr1 (248-299)||(32603148-32603199)
chr1 (452-526)||(6249667-6249740)
chr1 (452-526)||(32603363-32603436)
chr1 (254-299)||(6249900-6249945)
[»] chr8 (6 HSPs)
chr8 (317-428)||(15588104-15588216)
chr8 (248-299)||(15588244-15588295)
chr8 (254-298)||(9452611-9452655)
chr8 (248-299)||(24970882-24970933)
chr8 (248-298)||(24955100-24955150)
chr8 (260-292)||(30087493-30087525)
[»] scaffold0049 (2 HSPs)
scaffold0049 (317-399)||(13315-13397)
scaffold0049 (248-299)||(13425-13476)
[»] chr2 (6 HSPs)
chr2 (452-526)||(21024918-21024992)
chr2 (249-299)||(10256911-10256961)
chr2 (377-428)||(21025016-21025068)
chr2 (258-298)||(45297626-45297666)
chr2 (202-230)||(19709661-19709689)
chr2 (202-230)||(19714492-19714520)
[»] chr7 (5 HSPs)
chr7 (248-299)||(38795342-38795393)
chr7 (231-298)||(39512230-39512297)
chr7 (252-298)||(9792527-9792573)
chr7 (249-299)||(27619276-27619326)
chr7 (248-299)||(28106900-28106951)
[»] chr5 (1 HSPs)
chr5 (248-299)||(31956408-31956459)
[»] scaffold0057 (1 HSPs)
scaffold0057 (197-230)||(76493-76526)
[»] scaffold1028 (1 HSPs)
scaffold1028 (202-230)||(869-897)
[»] scaffold0807 (1 HSPs)
scaffold0807 (202-230)||(259-287)
[»] chr6 (4 HSPs)
chr6 (254-298)||(1222597-1222641)
chr6 (202-230)||(12491809-12491837)
chr6 (202-230)||(22625049-22625077)
chr6 (202-230)||(29955556-29955584)


Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 18 - 561
Target Start/End: Original strand, 15209187 - 15209753
Alignment:
Q  18 ccattcaccctcatttcgttatctacctaaaggtatcacctttcccatttctttgtttgctcttttgtctgttcctatattttgttttgttcctaatatc 117  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  15209187 ccattcaccctcatttcattatctacctaaaggtatcacctttcccatttctttgtttgttcttttgtctgttcctatattttgttttgttcctaatatc 15209286  T
Q  118 aagatttgttcttctgaagttttgaactgtcctccgttcgagcaacccgcgagactaacctttgctattatagagaagaactttaaggtaagggcggtat 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||    
T  15209287 aagatttgttcttctgaagttttgaactgtcctccgttcgagcaacccgcgagactaacctttgctattatagagaagaatttttaggtaagggcggtat 15209386  T
Q  218 tccgtacaattatgagcatgtttggtcctc-----------cttctcttttacttttaaggagaagtaggaccaaacacaattttaataaagt------- 299  Q
    || |||||||||||||||||||||||||||           |||||||| || ||||||||||||||| |||| |||||||||||||||||||           
T  15209387 tctgtacaattatgagcatgtttggtcctccttattttccacttctcttctagttttaaggagaagtatgacccaacacaattttaataaagttcttaat 15209486  T
Q  300 ------agtatcnnnnnnnnnggaaggaaagaaatgaaatagaagtgacttttaaaataagatgtaaaattaaacttttggccaacttttcggagctacc 393  Q
          ||||||         |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  15209487 aattgaagtatc-ttttttttggaaggaaagaaatgaaatagaagtgacttttaaaataagatgtaaaattgaacttttggccaacttttcggagctacc 15209585  T
Q  394 gttcactgcccacatatcgattcccgcagaaaccagnnnnnnnnnnnnnnnnnnnnnncttggcattgttcccgctgattttattttcctcttcaagtat 493  Q
     ||||||||||||| |||||||||||||||||| ||                      ||||||| |||||||||||||||||||||||| |||||||||    
T  15209586 attcactgcccacacatcgattcccgcagaaactagtttttattttattttattttttcttggcactgttcccgctgattttattttccttttcaagtat 15209685  T
Q  494 acccgccaaaacacataacctaattgtatatattctgatccaactttctcctccatccattctctgct 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15209686 acccgccaaaacacataacctaattgtatatattctgatccaactttctcctccatccattctctgct 15209753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 315 - 561
Target Start/End: Original strand, 15214843 - 15215089
Alignment:
Q  315 ggaaggaaagaaatgaaatagaagtgacttttaaaataagatgtaaaattaaacttttggccaacttttcggagctaccgttcactgcccacatatcgat 414  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  15214843 ggaaggaaagaaatgaaataaaagtgacttttaaaataagatgtaaaattgaacttttggccaacttttcggagctaccgttcactgcccacacatcgat 15214942  T
Q  415 tcccgcagaaaccagnnnnnnnnnnnnnnnnnnnnnncttggcattgttcccgctgattttattttcctcttcaagtatacccgccaaaacacataacct 514  Q
    |||||||||||||||                      ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  15214943 tcccgcagaaaccagtttttattttattttattttttcttggcactgttcccgctgattttattttccttttcaagtatacccgccaaaacacataacct 15215042  T
Q  515 aattgtatatattctgatccaactttctcctccatccattctctgct 561  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||    
T  15215043 aattgtatatattctgatctaactttctcctccatccattctctgct 15215089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 315 - 426
Target Start/End: Complemental strand, 4528559 - 4528448
Alignment:
Q  315 ggaaggaaagaaatgaaatagaagtgacttttaaaataagatgtaaaattaaacttttggccaacttttcggagctaccgttcactgcccacatatcgat 414  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| ||||||    
T  4528559 ggaaggaaagaaatcaaatagaagtgacttttaaaataagatgtaaaattgaacttttggccaacttttcggagctactgttcactgcccacacatcgat 4528460  T
Q  415 tcccgcagaaac 426  Q
    ||||||||||||    
T  4528459 tcccgcagaaac 4528448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 452 - 507
Target Start/End: Complemental strand, 4528421 - 4528366
Alignment:
Q  452 cttggcattgttcccgctgattttattttcctcttcaagtatacccgccaaaacac 507  Q
    ||||||| |||||||||| |||||||||| || |||||||||||||||||||||||    
T  4528421 cttggcactgttcccgctaattttatttttcttttcaagtatacccgccaaaacac 4528366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 248 - 300
Target Start/End: Complemental strand, 23201763 - 23201711
Alignment:
Q  248 cttctcttttacttttaaggagaagtaggaccaaacacaattttaataaagta 300  Q
    |||||||| ||||| |||||||||||||| ||||||| |||||||||||||||    
T  23201763 cttctcttctacttctaaggagaagtagggccaaacataattttaataaagta 23201711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 299
Target Start/End: Complemental strand, 4528637 - 4528586
Alignment:
Q  248 cttctcttttacttttaaggagaagtaggaccaaacacaattttaataaagt 299  Q
    |||||||| |||||| ||| ||||||||| ||||||||||||||||||||||    
T  4528637 cttctcttctactttcaagaagaagtagggccaaacacaattttaataaagt 4528586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 248 - 297
Target Start/End: Original strand, 55465702 - 55465751
Alignment:
Q  248 cttctcttttacttttaaggagaagtaggaccaaacacaattttaataaa 297  Q
    |||||||| |||||| ||||||||||||  ||||||||||||||||||||    
T  55465702 cttctcttatactttcaaggagaagtagagccaaacacaattttaataaa 55465751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 41396597 - 41396641
Alignment:
Q  254 ttttacttttaaggagaagtaggaccaaacacaattttaataaag 298  Q
    ||||| ||||||||||||||||| |||||||||||||||| ||||    
T  41396597 ttttatttttaaggagaagtagggccaaacacaattttaaaaaag 41396641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 44742547 - 44742597
Alignment:
Q  248 cttctcttttacttttaaggagaagtaggaccaaacacaattttaataaag 298  Q
    |||||||| ||||| |||| |||||| || |||||||||||||||||||||    
T  44742547 cttctcttctacttctaagaagaagtggggccaaacacaattttaataaag 44742597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 2e-60; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 315 - 559
Target Start/End: Original strand, 25704854 - 25705098
Alignment:
Q  315 ggaaggaaagaaatgaaatagaagtgacttttaaaataagatgtaaaattaaacttttggccaacttttcggagctaccgttcactgcccacatatcgat 414  Q
    |||||||||||||| |||||||||  |||||||||||||||||||||||| |||||||| |||||||||||||||||  |||||||||||||| ||||||    
T  25704854 ggaaggaaagaaatcaaatagaagcaacttttaaaataagatgtaaaattgaacttttgaccaacttttcggagctattgttcactgcccacacatcgat 25704953  T
Q  415 tcccgcagaaaccagnnnnnnnnnnnnnnnnnnnnnncttggcattgttcccgctgattttattttcctcttcaagtatacccgccaaaacacataacct 514  Q
    ||||||||||||||                        |||||| ||||||||||||||||| ||| || ||||||||||||||||||||||||||||||    
T  25704954 tcccgcagaaaccaatttttattttttatttttattttttggcactgttcccgctgattttaattttcttttcaagtatacccgccaaaacacataacct 25705053  T
Q  515 aattgtatatattctgatccaactttctcctccatccattctctg 559  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  25705054 aattgtatatattctgatccaactttctcctccattcattctctg 25705098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 317 - 391
Target Start/End: Complemental strand, 8100340 - 8100266
Alignment:
Q  317 aaggaaagaaatgaaatagaagtgacttttaaaataagatgtaaaattaaacttttggccaacttttcggagcta 391  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||| ||||| | | ||||||||||||||||    
T  8100340 aaggaaagaaatcaaatagaaatgacttttaaaataagatgtaaaattgaacttctagacaacttttcggagcta 8100266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 25704777 - 25704828
Alignment:
Q  248 cttctcttttacttttaaggagaagtaggaccaaacacaattttaataaagt 299  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  25704777 cttctcttctacttttaaggagaagtagggccaaacacaattttaataaagt 25704828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 299
Target Start/End: Complemental strand, 8100419 - 8100368
Alignment:
Q  248 cttctcttttacttttaaggagaagtaggaccaaacacaattttaataaagt 299  Q
    |||||||| |||||| ||||||||||||  ||||||||||||||||||||||    
T  8100419 cttctcttctactttcaaggagaagtagagccaaacacaattttaataaagt 8100368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 254 - 293
Target Start/End: Original strand, 46104992 - 46105031
Alignment:
Q  254 ttttacttttaaggagaagtaggaccaaacacaattttaa 293  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  46104992 ttttacttctaaggagaagtaggaccaaacacaattttaa 46105031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 1208363 - 1208391
Alignment:
Q  202 aaggtaagggcggtattccgtacaattat 230  Q
    |||||||||||||||||||||||||||||    
T  1208363 aaggtaagggcggtattccgtacaattat 1208391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 25163929 - 25163965
Alignment:
Q  254 ttttacttttaaggagaagtaggaccaaacacaattt 290  Q
    |||||||| |||||||||||||| |||||||||||||    
T  25163929 ttttacttctaaggagaagtagggccaaacacaattt 25163965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 315 - 428
Target Start/End: Original strand, 32603225 - 32603339
Alignment:
Q  315 ggaaggaaagaaatgaaatagaagtgacttttaaaataagatgtaaaattaaacttttggccaacttttcggagctaccgttcac-tgcccacatatcga 413  Q
    |||||||||||||| |||||||| |||||||||||||||||||||||||| || || | | ||||||||||||||||| ||||||  |||| || |||||    
T  32603225 ggaaggaaagaaatcaaatagaaatgacttttaaaataagatgtaaaattgaatttctagacaacttttcggagctactgttcacaggcccgcacatcga 32603324  T
Q  414 ttcccgcagaaacca 428  Q
    |||||||||||||||    
T  32603325 ttcccgcagaaacca 32603339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 316 - 392
Target Start/End: Complemental strand, 6249873 - 6249797
Alignment:
Q  316 gaaggaaagaaatgaaatagaagtgacttttaaaataagatgtaaaattaaacttttggccaacttttcggagctac 392  Q
    ||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| | | |||||||||||||||||    
T  6249873 gaaggaaagaaatcaaatagaaatgacttttaaaataagatgtaaaattgaacttctagacaacttttcggagctac 6249797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 32603148 - 32603199
Alignment:
Q  248 cttctcttttacttttaaggagaagtaggaccaaacacaattttaataaagt 299  Q
    |||||||| |||||| ||||||||||||| ||||||||||||||||||||||    
T  32603148 cttctcttctactttcaaggagaagtagggccaaacacaattttaataaagt 32603199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 452 - 526
Target Start/End: Complemental strand, 6249740 - 6249667
Alignment:
Q  452 cttggcattgttcccgctgattttattttcctcttcaagtatacccgccaaaacacataacctaattgtatatat 526  Q
    |||||||  ||||||||| |||||||||| || ||||| || ||||||||||| ||||||||||||| |||||||    
T  6249740 cttggcacagttcccgctaattttatttttcttttcaattaaacccgccaaaa-acataacctaattctatatat 6249667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 452 - 526
Target Start/End: Original strand, 32603363 - 32603436
Alignment:
Q  452 cttggcattgttcccgctgattttattttcctcttcaagtatacccgccaaaacacataacctaattgtatatat 526  Q
    |||||||  ||||||||| |||||||||| || ||||| ||  |||||||||| ||||||||||||| |||||||    
T  32603363 cttggcacagttcccgctaattttatttttcttttcaattaatcccgccaaaa-acataacctaattctatatat 32603436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 299
Target Start/End: Complemental strand, 6249945 - 6249900
Alignment:
Q  254 ttttacttttaaggagaagtaggaccaaacacaattttaataaagt 299  Q
    ||||||||| ||||||||||| |  |||||||||||||||||||||    
T  6249945 ttttactttcaaggagaagtatggtcaaacacaattttaataaagt 6249900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 317 - 428
Target Start/End: Complemental strand, 15588216 - 15588104
Alignment:
Q  317 aaggaaagaaatgaaatagaagtgacttttaaaataagatgtaaaattaaacttttggccaacttttcggagctaccgttcac-tgcccacatatcgatt 415  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||||||||| | | |||||||||||| |||| ||||||  ||||    |||||||    
T  15588216 aaggaaagaaatcaaatagaaatgacttttaaaataagatgtaaaattaaacttctagacaacttttcggaactactgttcacacgccccagcatcgatt 15588117  T
Q  416 cccgcagaaacca 428  Q
    |||||||||||||    
T  15588116 cccgcagaaacca 15588104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 299
Target Start/End: Complemental strand, 15588295 - 15588244
Alignment:
Q  248 cttctcttttacttttaaggagaagtaggaccaaacacaattttaataaagt 299  Q
    |||||||| |||||| |||||||||||||  |||||||||||||||||||||    
T  15588295 cttctcttctactttcaaggagaagtagggtcaaacacaattttaataaagt 15588244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 9452611 - 9452655
Alignment:
Q  254 ttttacttttaaggagaagtaggaccaaacacaattttaataaag 298  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||    
T  9452611 ttttacttctaaggagaagtagggccaaacacaattttaaaaaag 9452655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 24970882 - 24970933
Alignment:
Q  248 cttctcttttacttttaaggagaagtaggaccaaacacaattttaataaagt 299  Q
    |||||||| ||||| ||| |||||||||| ||||||| ||||||||||||||    
T  24970882 cttctcttctacttctaaagagaagtagggccaaacataattttaataaagt 24970933  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 24955100 - 24955150
Alignment:
Q  248 cttctcttttacttttaaggagaagtaggaccaaacacaattttaataaag 298  Q
    ||||| || |||||||||| ||||||||| ||||||| |||||||||||||    
T  24955100 cttctattctacttttaagaagaagtagggccaaacataattttaataaag 24955150  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 260 - 292
Target Start/End: Complemental strand, 30087525 - 30087493
Alignment:
Q  260 ttttaaggagaagtaggaccaaacacaatttta 292  Q
    ||||||||||||||||| |||||||||||||||    
T  30087525 ttttaaggagaagtagggccaaacacaatttta 30087493  T

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Target: scaffold0049 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 317 - 399
Target Start/End: Complemental strand, 13397 - 13315
Alignment:
Q  317 aaggaaagaaatgaaatagaagtgacttttaaaataagatgtaaaattaaacttttggccaacttttcggagctaccgttcac 399  Q
    |||||||||||| |||||||| |||||||||||||||||||||||||| ||||| |   |||||||||||| |||| ||||||    
T  13397 aaggaaagaaatcaaatagaaatgacttttaaaataagatgtaaaattgaacttctaaacaacttttcggaactactgttcac 13315  T

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Target: scaffold0049; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 248 - 299
Target Start/End: Complemental strand, 13476 - 13425
Alignment:
Q  248 cttctcttttacttttaaggagaagtaggaccaaacacaattttaataaagt 299  Q
    |||||||| |||||| ||||||||||||| ||||||||||||||||||||||    
T  13476 cttctcttctactttcaaggagaagtagggccaaacacaattttaataaagt 13425  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 452 - 526
Target Start/End: Complemental strand, 21024992 - 21024918
Alignment:
Q  452 cttggcattgttcccgctgattttattttcctcttcaagtatacccgccaaaacacataacctaattgtatatat 526  Q
    |||||||  ||||||||| |||||||||| || ||||| || ||||||||||||||||||||||||| |||||||    
T  21024992 cttggcacagttcccgctaattttatttttcttttcaattaaacccgccaaaacacataacctaattctatatat 21024918  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 10256911 - 10256961
Alignment:
Q  249 ttctcttttacttttaaggagaagtaggaccaaacacaattttaataaagt 299  Q
    ||||||| ||||| |||||||||||||| ||||||| ||||||||||||||    
T  10256911 ttctcttctacttctaaggagaagtagggccaaacataattttaataaagt 10256961  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 377 - 428
Target Start/End: Complemental strand, 21025068 - 21025016
Alignment:
Q  377 aacttttcggagctaccgttcactg-cccacatatcgattcccgcagaaacca 428  Q
    |||||||||||||||| |||||||| |||||| |||||||||| |||||||||    
T  21025068 aacttttcggagctactgttcactgccccacacatcgattcccacagaaacca 21025016  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 258 - 298
Target Start/End: Complemental strand, 45297666 - 45297626
Alignment:
Q  258 acttttaaggagaagtaggaccaaacacaattttaataaag 298  Q
    |||| |||||||||||||| |||||||||||||||||||||    
T  45297666 acttctaaggagaagtagggccaaacacaattttaataaag 45297626  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 19709689 - 19709661
Alignment:
Q  202 aaggtaagggcggtattccgtacaattat 230  Q
    |||||||||||||||||||||||||||||    
T  19709689 aaggtaagggcggtattccgtacaattat 19709661  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 19714520 - 19714492
Alignment:
Q  202 aaggtaagggcggtattccgtacaattat 230  Q
    |||||||||||||||||||||||||||||    
T  19714520 aaggtaagggcggtattccgtacaattat 19714492  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 38795342 - 38795393
Alignment:
Q  248 cttctcttttacttttaaggagaagtaggaccaaacacaattttaataaagt 299  Q
    |||||||| ||||| |||||||||||||| ||||||| ||||||||||||||    
T  38795342 cttctcttctacttctaaggagaagtagggccaaacataattttaataaagt 38795393  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 231 - 298
Target Start/End: Complemental strand, 39512297 - 39512230
Alignment:
Q  231 gagcatgtttggtcctccttctcttttacttttaaggagaagtaggaccaaacacaattttaataaag 298  Q
    |||||||||||| ||||||| | || ||||| ||| |||||||||| |||||||||||||||| ||||    
T  39512297 gagcatgtttggccctccttattttctacttctaaagagaagtagggccaaacacaattttaaaaaag 39512230  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 298
Target Start/End: Complemental strand, 9792573 - 9792527
Alignment:
Q  252 tcttttacttttaaggagaagtaggaccaaacacaattttaataaag 298  Q
    ||||||||||||||| |||||| || |||||||||||||||||||||    
T  9792573 tcttttacttttaagaagaagtggggccaaacacaattttaataaag 9792527  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 299
Target Start/End: Original strand, 27619276 - 27619326
Alignment:
Q  249 ttctcttttacttttaaggagaagtaggaccaaacacaattttaataaagt 299  Q
    ||||||| ||||| |||||||||||||| ||||||| ||||||||||||||    
T  27619276 ttctcttctacttctaaggagaagtagggccaaacataattttaataaagt 27619326  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 299
Target Start/End: Original strand, 28106900 - 28106951
Alignment:
Q  248 cttctcttttacttttaaggagaagtaggaccaaacacaattttaataaagt 299  Q
    |||||||| ||||| |||| |||||||| |||||||| ||||||||||||||    
T  28106900 cttctcttctacttctaagaagaagtagaaccaaacataattttaataaagt 28106951  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 248 - 299
Target Start/End: Complemental strand, 31956459 - 31956408
Alignment:
Q  248 cttctcttttacttttaaggagaagtaggaccaaacacaattttaataaagt 299  Q
    |||||||| ||||| |||||||||||||| ||||||| ||||||||||||||    
T  31956459 cttctcttctacttctaaggagaagtagggccaaacataattttaataaagt 31956408  T

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Target: scaffold0057 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 230
Target Start/End: Complemental strand, 76526 - 76493
Alignment:
Q  197 actttaaggtaagggcggtattccgtacaattat 230  Q
    |||| |||||||||||||||||||||||||||||    
T  76526 acttaaaggtaagggcggtattccgtacaattat 76493  T

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Target: scaffold1028 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1028
Description:

Target: scaffold1028; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 869 - 897
Alignment:
Q  202 aaggtaagggcggtattccgtacaattat 230  Q
    |||||||||||||||||||||||||||||    
T  869 aaggtaagggcggtattccgtacaattat 897  T

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Target: scaffold0807 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0807
Description:

Target: scaffold0807; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 287 - 259
Alignment:
Q  202 aaggtaagggcggtattccgtacaattat 230  Q
    |||||||||||||||||||||||||||||    
T  287 aaggtaagggcggtattccgtacaattat 259  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 298
Target Start/End: Original strand, 1222597 - 1222641
Alignment:
Q  254 ttttacttttaaggagaagtaggaccaaacacaattttaataaag 298  Q
    |||||||| ||| |||||||||| |||||||||||||||| ||||    
T  1222597 ttttacttataaagagaagtagggccaaacacaattttaaaaaag 1222641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 12491809 - 12491837
Alignment:
Q  202 aaggtaagggcggtattccgtacaattat 230  Q
    |||||||||||||||||||||||||||||    
T  12491809 aaggtaagggcggtattccgtacaattat 12491837  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 230
Target Start/End: Original strand, 22625049 - 22625077
Alignment:
Q  202 aaggtaagggcggtattccgtacaattat 230  Q
    |||||||||||||||||||||||||||||    
T  22625049 aaggtaagggcggtattccgtacaattat 22625077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 202 - 230
Target Start/End: Complemental strand, 29955584 - 29955556
Alignment:
Q  202 aaggtaagggcggtattccgtacaattat 230  Q
    |||||||||||||||||||||||||||||    
T  29955584 aaggtaagggcggtattccgtacaattat 29955556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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