View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11575_low_63 (Length: 220)

Name: NF11575_low_63
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11575_low_63
NF11575_low_63
[»] chr5 (16 HSPs)
chr5 (18-175)||(29870976-29871133)
chr5 (41-171)||(29852112-29852242)
chr5 (41-175)||(30434635-30434769)
chr5 (41-175)||(30482217-30482351)
chr5 (47-172)||(30243531-30243656)
chr5 (36-182)||(30339674-30339820)
chr5 (36-175)||(30748451-30748590)
chr5 (116-175)||(30059245-30059304)
chr5 (115-172)||(30678330-30678387)
chr5 (18-94)||(30678477-30678553)
chr5 (41-94)||(30059101-30059154)
chr5 (120-173)||(30398957-30399010)
chr5 (41-91)||(4380477-4380527)
chr5 (117-171)||(30205399-30205453)
chr5 (125-175)||(30203047-30203097)
chr5 (39-91)||(30205252-30205304)
[»] chr7 (2 HSPs)
chr7 (114-175)||(26706218-26706279)
chr7 (20-91)||(26706055-26706126)
[»] chr4 (3 HSPs)
chr4 (40-94)||(20297912-20297966)
chr4 (119-170)||(20297767-20297818)
chr4 (117-170)||(20303720-20303773)
[»] chr1 (1 HSPs)
chr1 (117-175)||(7582884-7582942)


Alignment Details
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 175
Target Start/End: Original strand, 29870976 - 29871133
Alignment:
Q  18 aatccttcacaataccagatctctagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaattgagagaaacaagttactaaca 117  Q
    ||||||||||||| ||| |||  || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||| ||||    
T  29870976 aatccttcacaattccaaatccttaaaattcgaagggattgaagaccttcccaattttgctctggtaaggactccaattgagagaaacaatatacaaaca 29871075  T
Q  118 gagattgaagagaagtaaggtttttgaacatcccctctgggaaggatgttattccttc 175  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29871076 gagatagaagagaagtaaggtttttgaacatcccctctgggaaggatgttattccttc 29871133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 41 - 171
Target Start/End: Original strand, 29852112 - 29852242
Alignment:
Q  41 tagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaattgagagaaacaagttactaacagagattgaagagaagtaaggttt 140  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |||| | |||||||||||||||||||||||||    
T  29852112 tagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaattgtgggaaacaatttacaaccagagattgaagagaagtaaggttt 29852211  T
Q  141 ttgaacatcccctctgggaaggatgttattc 171  Q
    ||||||||| |||||||||||||||||||||    
T  29852212 ttgaacatctcctctgggaaggatgttattc 29852242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 41 - 175
Target Start/End: Original strand, 30434635 - 30434769
Alignment:
Q  41 tagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaattgagagaaacaagttactaacagagattgaagagaagtaaggttt 140  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |  ||| ||||||| ||||| |||||||||||||||||||||    
T  30434635 tagagctcgaagggattgaagaccttcccagttttgctctggtaaggactccaattgtggtaaaaaagttacaaacagggattgaagagaagtaaggttt 30434734  T
Q  141 ttgaacatcccctctgggaaggatgttattccttc 175  Q
    ||||||||| ||||||| |||||||||||||||||    
T  30434735 ttgaacatctcctctggtaaggatgttattccttc 30434769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 41 - 175
Target Start/End: Original strand, 30482217 - 30482351
Alignment:
Q  41 tagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaattgagagaaacaagttactaacagagattgaagagaagtaaggttt 140  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||  ||||  |||| |||||||| |||||||||||    
T  30482217 tagagctcgaagggattgaagaccttcccaattttgctctggtaaggactccaattgtgggaaccaatctacttccagatattgaagacaagtaaggttt 30482316  T
Q  141 ttgaacatcccctctgggaaggatgttattccttc 175  Q
    |||||||||||||||||||||||||||||||||||    
T  30482317 ttgaacatcccctctgggaaggatgttattccttc 30482351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 47 - 172
Target Start/End: Complemental strand, 30243656 - 30243531
Alignment:
Q  47 tcgaagggattgaagaccttcccaattttgctctggtaaggactccaattgagagaaacaagttactaacagagattgaagagaagtaaggtttttgaac 146  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||| | ||||| | ||||  ||||||||||||||||||||||||||||||||    
T  30243656 tcgaagggattgaagaccttcccaatttgtctctggtaaggactccaattgtgggaaactatttacagacagagattgaagagaagtaaggtttttgaac 30243557  T
Q  147 atcccctctgggaaggatgttattcc 172  Q
    ||||||||||||||||||||||||||    
T  30243556 atcccctctgggaaggatgttattcc 30243531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 36 - 182
Target Start/End: Complemental strand, 30339820 - 30339674
Alignment:
Q  36 atctctagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaattgagagaaacaagttactaacagagattgaagagaagtaa 135  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |    ||| | | |   |||||||||||||||||||||    
T  30339820 atctgtagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaactcattacaactaatgatagacagagattgaagagaagtaa 30339721  T
Q  136 ggtttttgaacatcccctctgggaaggatgttattccttctccttca 182  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  30339720 ggtttttgaacatcccctctgggaaggatgttattccttcaccttca 30339674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 36 - 175
Target Start/End: Original strand, 30748451 - 30748590
Alignment:
Q  36 atctctagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaattgagagaaacaagttactaacagagattgaagagaagtaa 135  Q
    |||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||| | |    ||||| | |   |||||||||||||||||||||    
T  30748451 atctgtagagctcgaagggattgaagaccttcccagttttgctctggtaaggactccaactcattacaacaattgatacacagagattgaagagaagtaa 30748550  T
Q  136 ggtttttgaacatcccctctgggaaggatgttattccttc 175  Q
    |||||||||||||| ||||||| |||||||||||||||||    
T  30748551 ggtttttgaacatctcctctggtaaggatgttattccttc 30748590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 116 - 175
Target Start/End: Original strand, 30059245 - 30059304
Alignment:
Q  116 cagagattgaagagaagtaaggtttttgaacatcccctctgggaaggatgttattccttc 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30059245 cagagattgaagagaagtaaggtttttgaacatcccctctgggaaggatgttattccttc 30059304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 115 - 172
Target Start/End: Complemental strand, 30678387 - 30678330
Alignment:
Q  115 acagagattgaagagaagtaaggtttttgaacatcccctctgggaaggatgttattcc 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30678387 acagagattgaagagaagtaaggtttttgaacatcccctctgggaaggatgttattcc 30678330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 30678553 - 30678477
Alignment:
Q  18 aatccttcacaataccagatctctagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaa 94  Q
    |||||||||||||  |  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30678553 aatccttcacaattacgaatctttagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaa 30678477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 30059101 - 30059154
Alignment:
Q  41 tagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaa 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30059101 tagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaa 30059154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 173
Target Start/End: Original strand, 30398957 - 30399010
Alignment:
Q  120 gattgaagagaagtaaggtttttgaacatcccctctgggaaggatgttattcct 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30398957 gattgaagagaagtaaggtttttgaacatcccctctgggaaggatgttattcct 30399010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 4380477 - 4380527
Alignment:
Q  41 tagagttcgaagggattgaagaccttcccaattttgctctggtaaggactc 91  Q
    |||||| | |||||||||||||||||| |||||||||||||||||||||||    
T  4380477 tagagtcctaagggattgaagaccttctcaattttgctctggtaaggactc 4380527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 30205399 - 30205453
Alignment:
Q  117 agagattgaagagaagtaaggtttttgaacatcccctctgggaaggatgttattc 171  Q
    |||| ||||||| |||||||||||||||||||||| || ||||||||||||||||    
T  30205399 agagcttgaagacaagtaaggtttttgaacatcccgtccgggaaggatgttattc 30205453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 175
Target Start/End: Original strand, 30203047 - 30203097
Alignment:
Q  125 aagagaagtaaggtttttgaacatcccctctgggaaggatgttattccttc 175  Q
    |||| ||||||||||| | |||||||||| ||||||||| |||||||||||    
T  30203047 aagacaagtaaggtttctaaacatcccctttgggaaggaggttattccttc 30203097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 30205252 - 30205304
Alignment:
Q  39 tctagagttcgaagggattgaagaccttcccaattttgctctggtaaggactc 91  Q
    ||||||||||| |||||||| |||||||||||| ||| || |||||| |||||    
T  30205252 tctagagttcggagggattgcagaccttcccaaatttcctttggtaaagactc 30205304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 6e-27; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 114 - 175
Target Start/End: Original strand, 26706218 - 26706279
Alignment:
Q  114 aacagagattgaagagaagtaaggtttttgaacatcccctctgggaaggatgttattccttc 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26706218 aacagagattgaagagaagtaaggtttttgaacatcccctctgggaaggatgttattccttc 26706279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Original strand, 26706055 - 26706126
Alignment:
Q  20 tccttcacaataccagatctctagagttcgaagggattgaagaccttcccaattttgctctggtaaggactc 91  Q
    ||||| ||||| ||| ||||||||||| | |||||||||||||||||||||  ||| |||||||| ||||||    
T  26706055 tcctttacaatcccaaatctctagagtcctaagggattgaagaccttcccacattttctctggtagggactc 26706126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 40 - 94
Target Start/End: Complemental strand, 20297966 - 20297912
Alignment:
Q  40 ctagagttcgaagggattgaagaccttcccaattttgctctggtaaggactccaa 94  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  20297966 ctagagttcgaagggattgaagaccttcccaaatttgctctggtaaggactccaa 20297912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 119 - 170
Target Start/End: Complemental strand, 20297818 - 20297767
Alignment:
Q  119 agattgaagagaagtaaggtttttgaacatcccctctgggaaggatgttatt 170  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  20297818 agattgaagagaagtaaggtttttgaacatcccatctgggaaggatgttatt 20297767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 20303773 - 20303720
Alignment:
Q  117 agagattgaagagaagtaaggtttttgaacatcccctctgggaaggatgttatt 170  Q
    |||| ||||||| ||||||||||| |||||||||||| | ||||||||||||||    
T  20303773 agagtttgaagacaagtaaggtttatgaacatccccttttggaaggatgttatt 20303720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 117 - 175
Target Start/End: Complemental strand, 7582942 - 7582884
Alignment:
Q  117 agagattgaagagaagtaaggtttttgaacatcccctctgggaaggatgttattccttc 175  Q
    |||||||| ||| |||||||||||   |||||| ||| |||||||||||||||||||||    
T  7582942 agagattggagacaagtaaggtttccaaacatctcctttgggaaggatgttattccttc 7582884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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