View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11575_low_65 (Length: 218)

Name: NF11575_low_65
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11575_low_65
NF11575_low_65
[»] chr6 (17 HSPs)
chr6 (1-143)||(13943377-13943519)
chr6 (1-146)||(14112873-14113018)
chr6 (1-146)||(13470445-13470587)
chr6 (1-143)||(13860539-13860681)
chr6 (41-162)||(14017423-14017544)
chr6 (1-143)||(14087025-14087164)
chr6 (1-146)||(13890529-13890671)
chr6 (1-155)||(14049258-14049409)
chr6 (142-217)||(14027382-14027457)
chr6 (41-143)||(14027483-14027585)
chr6 (41-145)||(13872710-13872814)
chr6 (155-218)||(13860714-13860777)
chr6 (153-216)||(13890702-13890765)
chr6 (149-217)||(13943285-13943353)
chr6 (153-214)||(13470618-13470679)
chr6 (153-217)||(14112790-14112854)
chr6 (1-34)||(14000425-14000458)


Alignment Details
Target: chr6 (Bit Score: 99; Significance: 5e-49; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 13943519 - 13943377
Alignment:
Q  1 ttcttcaattcaaggctgcccttattgatgaatatgacaacatgttgtcatcttggaggacagaagattgctgccaatggaagggagttggttgcagcaa 100  Q
    |||| |||||||| |||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  13943519 ttctacaattcaaagctggccttattgatgaatatgacaacatgctgtcatcttggacgacagaagattgctgccaatggaagggaattggttgcagcaa 13943420  T
Q  101 cgtcacaggtcatgtacttaagctcaaccttcatggtgattat 143  Q
    |||||| ||||||||| ||| |||| ||||||||||| |||||    
T  13943419 cgtcactggtcatgtaattatgctcgaccttcatggtaattat 13943377  T

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Target: chr6; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 14113018 - 14112873
Alignment:
Q  1 ttcttcaattcaaggctgcccttattgatgaatatgacaacatgttgtcatcttggaggacagaagattgctgccaatggaagggagttggttgcagcaa 100  Q
    |||| ||||||||||||| ||||| |||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  14113018 ttctacaattcaaggctggccttactgatgtgtatgacaacatgctgtcatcttggaggacagaagattgctgccaatggaagggaattggttgcagcaa 14112919  T
Q  101 cgtcacaggtcatgtacttaagctcaaccttcatggtgattataat 146  Q
    ||||||  |||||||| ||| |||| ||||||||||| | ||||||    
T  14112918 cgtcacttgtcatgtaattatgctcgaccttcatggtaactataat 14112873  T

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Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 13470445 - 13470587
Alignment:
Q  1 ttcttcaattcaaggctgcccttattgatgaatatgacaacatgttgtcatcttggaggacagaagattgctgccaatggaagggagttggttgcagcaa 100  Q
    ||||||||||||||||||||||||||||||| |||| ||   ||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  13470445 ttcttcaattcaaggctgcccttattgatgactatggca---tgttgtcatcttggacgacagaagattgctgccaatggaagggaattggttgcagcaa 13470541  T
Q  101 cgtcacaggtcatgtacttaagctcaaccttcatggtgattataat 146  Q
    | |||| | ||||||| ||| ||||||||||||||| |||| ||||    
T  13470542 cctcactgatcatgtaattatgctcaaccttcatggagattttaat 13470587  T

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Target: chr6; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 13860539 - 13860681
Alignment:
Q  1 ttcttcaattcaaggctgcccttattgatgaatatgacaacatgttgtcatcttggaggacagaagattgctgccaatggaagggagttggttgcagcaa 100  Q
    |||| ||||||||||||| ||||| |||||  |||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  13860539 ttctacaattcaaggctggccttactgatgtgtatgacaacatgctgtcatcttggacgacagaagattgctgccaatggaagggaattggttgcagcaa 13860638  T
Q  101 cgtcacaggtcatgtacttaagctcaaccttcatggtgattat 143  Q
    ||| || ||||||||| ||| |||| ||||||||||| |||||    
T  13860639 cgtaactggtcatgtaattatgctcgaccttcatggtaattat 13860681  T

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Target: chr6; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 41 - 162
Target Start/End: Complemental strand, 14017544 - 14017423
Alignment:
Q  41 catgttgtcatcttggaggacagaagattgctgccaatggaagggagttggttgcagcaacgtcacaggtcatgtacttaagctcaaccttcatggtgat 140  Q
    |||||||||||||||||  ||||||||||||||| ||||| | ||| |||||||||||||| |||| ||||||||||||| |||||||||||||||||||    
T  14017544 catgttgtcatcttggacaacagaagattgctgcgaatggtatggaattggttgcagcaacctcactggtcatgtacttatgctcaaccttcatggtgat 14017445  T
Q  141 tataatagttactatatcagag 162  Q
    ||||||| ||||||||||||||    
T  14017444 tataataattactatatcagag 14017423  T

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Target: chr6; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 14087164 - 14087025
Alignment:
Q  1 ttcttcaattcaaggctgcccttattgatgaatatgacaacatgttgtcatcttggaggacagaagattgctgccaatggaagggagttggttgcagcaa 100  Q
    |||||||||| ||||||||||||| ||||  ||||| ||   || |||||||||||| |||||||||||||||||||||||||||| ||||||||| |||    
T  14087164 ttcttcaatttaaggctgcccttactgatccatatggca---tgctgtcatcttggacgacagaagattgctgccaatggaagggaattggttgcaacaa 14087068  T
Q  101 cgtcacaggtcatgtacttaagctcaaccttcatggtgattat 143  Q
    | |||| || |||||||||| |||||||||||||||| |||||    
T  14087067 cctcactggccatgtacttatgctcaaccttcatggtaattat 14087025  T

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Target: chr6; HSP #7
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 146
Target Start/End: Original strand, 13890529 - 13890671
Alignment:
Q  1 ttcttcaattcaaggctgcccttattgatgaatatgacaacatgttgtcatcttggaggacagaagattgctgccaatggaagggagttggttgcagcaa 100  Q
    ||||||||||||||||||  ||||  |||||||||| ||   ||||||||||||||| ||| | |||||||||| ||||| | ||| |||||||||||||    
T  13890529 ttcttcaattcaaggctggtcttaccgatgaatatggca---tgttgtcatcttggacgacggcagattgctgcgaatggtatggaattggttgcagcaa 13890625  T
Q  101 cgtcacaggtcatgtacttaagctcaaccttcatggtgattataat 146  Q
    | |||| |||||||||||||||||| ||||||||||||| ||||||    
T  13890626 cctcactggtcatgtacttaagctcgaccttcatggtgactataat 13890671  T

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Target: chr6; HSP #8
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 14049409 - 14049258
Alignment:
Q  1 ttcttcaattcaaggctgcccttattgatgaatatgacaacatgttgtcatcttggaggacagaagattgctgccaatggaagggagttggttgcagcaa 100  Q
    |||| ||||||||| ||| |||||||||||||| |||||   ||||||||| |||||  || |||||||||||||||||| | ||| |||||||||||||    
T  14049409 ttctgcaattcaagtctggccttattgatgaatttgaca---tgttgtcattttggacaactgaagattgctgccaatggtatggaattggttgcagcaa 14049313  T
Q  101 cgtcacaggtcatgtacttaagctcaaccttcatggtgattataatagttactat 155  Q
      |||| || |||||||||| |||| | ||||||||||||||||||  |||||||    
T  14049312 tatcactggccatgtacttatgctcgatcttcatggtgattataattattactat 14049258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 14027457 - 14027382
Alignment:
Q  142 ataatagttactatatcagaggtgacatccataagtcattgatggagttgcaacaattacaatatttgaacctcag 217  Q
    |||||| |||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  14027457 ataataattactatatcagtggtgatatccacaagtcattgatggagttgcaacaattacaatatttgaacctcag 14027382  T

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Target: chr6; HSP #10
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 41 - 143
Target Start/End: Complemental strand, 14027585 - 14027483
Alignment:
Q  41 catgttgtcatcttggaggacagaagattgctgccaatggaagggagttggttgcagcaacgtcacaggtcatgtacttaagctcaaccttcatggtgat 140  Q
    |||||||||||||||||  ||||||||||||||| ||||| | ||| |||||||||||||  |||| || |||||||||| |||| ||||||||||||||    
T  14027585 catgttgtcatcttggacaacagaagattgctgcgaatggtatggaattggttgcagcaatatcactggccatgtacttatgctcgaccttcatggtgat 14027486  T
Q  141 tat 143  Q
    |||    
T  14027485 tat 14027483  T

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Target: chr6; HSP #11
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 41 - 145
Target Start/End: Original strand, 13872710 - 13872814
Alignment:
Q  41 catgttgtcatcttggaggacagaagattgctgccaatggaagggagttggttgcagcaacgtcacaggtcatgtacttaagctcaaccttcatggtgat 140  Q
    |||||||||||||||||  || | |||||||||||||||| | ||| || ||||||||||| |||| || |||||||||| |||| | ||||||||||||    
T  13872710 catgttgtcatcttggacaacggcagattgctgccaatggtatggaattcgttgcagcaacctcactggccatgtacttatgctcgatcttcatggtgat 13872809  T
Q  141 tataa 145  Q
    |||||    
T  13872810 tataa 13872814  T

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Target: chr6; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 155 - 218
Target Start/End: Original strand, 13860714 - 13860777
Alignment:
Q  155 tatcagaggtgacatccataagtcattgatggagttgcaacaattacaatatttgaacctcagc 218  Q
    |||||| ||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  13860714 tatcaggggtgatatccacaagtcattggtggagttgcaacaattacaatatttgaacctcagc 13860777  T

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Target: chr6; HSP #13
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 153 - 216
Target Start/End: Original strand, 13890702 - 13890765
Alignment:
Q  153 tatatcagaggtgacatccataagtcattgatggagttgcaacaattacaatatttgaacctca 216  Q
    |||||||  ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  13890702 tatatcatgggtgatatccacaagtcattgatggagttgcaacagttacaatatttgaacctca 13890765  T

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Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 217
Target Start/End: Complemental strand, 13943353 - 13943285
Alignment:
Q  149 ttactatatcagaggtgacatccataagtcattgatggagttgcaacaattacaatatttgaacctcag 217  Q
    |||| ||||||| ||||| ||||| |||||| |||||||||||||||| ||||||||||||||| ||||    
T  13943353 ttaccatatcagcggtgatatccacaagtcactgatggagttgcaacagttacaatatttgaacttcag 13943285  T

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Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 13470618 - 13470679
Alignment:
Q  153 tatatcagaggtgacatccataagtcattgatggagttgcaacaattacaatatttgaacct 214  Q
    ||||| || ||||| ||||| |||||||||||||||||||| |||||| | |||||||||||    
T  13470618 tatatgagtggtgatatccacaagtcattgatggagttgcagcaattaaagtatttgaacct 13470679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 14112854 - 14112790
Alignment:
Q  153 tatatcagaggtgacatccataagtcattgatggagttgcaacaattacaatatttgaacctcag 217  Q
    |||||||| ||||| ||||| |||||| |||| |||||||| |||||| | ||||||||||||||    
T  14112854 tatatcagtggtgatatccacaagtcactgatagagttgcagcaattaaagtatttgaacctcag 14112790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 14000458 - 14000425
Alignment:
Q  1 ttcttcaattcaaggctgcccttattgatgaata 34  Q
    |||||||||||||||||| |||||||||||||||    
T  14000458 ttcttcaattcaaggctggccttattgatgaata 14000425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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