View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11575_low_66 (Length: 211)
Name: NF11575_low_66
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_low_66 |
 | |
|
| [»] scaffold0079 (1 HSPs) |
| | |
|
| [»] scaffold0384 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 3 - 189
Target Start/End: Original strand, 41075425 - 41075611
Alignment:
| Q |
3 |
atattcacaaatttagtttctatgtgcatatatgaattctttattatcaatcactaaacctgcaggatgagttagtgttatgacgaaaggtgggataaat |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
41075425 |
atattcacaaatttagtttctatgtgcatatatgaattctttattatcaatcactaaacctgcaggatgagttattgttatgacgaaaggtgggataaat |
41075524 |
T |
|
| Q |
103 |
gttttcacgttggtaagctcccaggggaagattaaagacatgggaaaaagaatgaggactgagagtaagagaaagagaagcagtttt |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41075525 |
gttttcacgttggtaagctcccaggggaagattaaagacatgggaaaaagaatgaggactgagagtaagagaaagagaagcattttt |
41075611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0079 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold0079
Description:
Target: scaffold0079; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 3 - 189
Target Start/End: Complemental strand, 6246 - 6061
Alignment:
| Q |
3 |
atattcacaaatttagtttctatgtgcatatatgaattctttattatcaatcactaaacctgcaggatgagttagtgttatgacgaaaggtgggataaat |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | || || || |||| ||||||||||| |||| |
|
|
| T |
6246 |
atattcacaaatttagtttctatgtgcatatatgaattctttatcatcaatctctaaacctgcagaaggatgcagagt-atgaagaaaggtgggagaaat |
6148 |
T |
|
| Q |
103 |
gttttcacgttggtaagctcccaggggaagattaaagacatgggaaaaagaatgaggactgagagtaagagaaagagaagcagtttt |
189 |
Q |
| |
|
||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||| |||| |||||| |||||||||||||| |
|
|
| T |
6147 |
gttttcacgttggtaagctcccaggggaaaagtgaagacatgggaaaaagaatgaggactcagagcaagagatagagaagcagtttt |
6061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0384 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: scaffold0384
Description:
Target: scaffold0384; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 3 - 189
Target Start/End: Complemental strand, 3685 - 3502
Alignment:
| Q |
3 |
atattcacaaatttagtttctatgtgcatatatgaattctttattatcaatcactaaacctgcaggatgagttagtgttatgacgaaaggtgggataaat |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| | || || || || | ||||||||||| |||| |
|
|
| T |
3685 |
atattcacaaatttagtttctatgtgcatatatgaattctttatcatcaatctctaaacctgcagaaggatgcagagt-ataaagaaaggtgggagaaat |
3587 |
T |
|
| Q |
103 |
gttttcacgttggtaagctcccaggggaagattaaagacatgggaaaaagaatgaggactgagagtaagagaaagagaagcagtttt |
189 |
Q |
| |
|
|||||||||| |||||||||||||||||| | | |||||||||||||||||||||||||| || |||||| |||||||||||||| |
|
|
| T |
3586 |
gttttcacgtgggtaagctcccaggggaaaagtgaagacatgggaaaaagaatgaggact--cagcaagagatagagaagcagtttt |
3502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 72
Target Start/End: Original strand, 4382918 - 4382986
Alignment:
| Q |
6 |
ttcacaaatttagtttctatgtgcatatatgaattctttatt--atcaatcactaaacctgcaggatga |
72 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||| | ||||||| ||||||| |||||||| |
|
|
| T |
4382918 |
ttcacaaattcagtttctatgtgcatatttgaattctttaatacatcaatctctaaaccaacaggatga |
4382986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 62
Target Start/End: Complemental strand, 4524971 - 4524915
Alignment:
| Q |
6 |
ttcacaaatttagtttctatgtgcatatatgaattctttattatcaatcactaaacc |
62 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||| |||| ||||| || ||||||| |
|
|
| T |
4524971 |
ttcacaaatttagtttctttatgcatatatgaattatttaatatcattctctaaacc |
4524915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 444722 - 444783
Alignment:
| Q |
6 |
ttcacaaatttagtttctatgtgcatatatgaattctttattatcaatcactaaacctgcag |
67 |
Q |
| |
|
|||||||||||| | | | ||||||||| ||||||||||| |||||||| |||||||||||| |
|
|
| T |
444722 |
ttcacaaatttattgtttgtgtgcatatttgaattctttaatatcaatctctaaacctgcag |
444783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University