View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_low_67 (Length: 209)
Name: NF11575_low_67
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_low_67 |
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Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 201
Target Start/End: Original strand, 29643318 - 29643517
Alignment:
| Q |
2 |
ttagaactcattttatataagatagttttagatgatgtctctcttggatttctttgaaagtgttgactaatagagtttgataccgattcattggctatta |
101 |
Q |
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| T |
29643318 |
ttagaactcattttatataagatagttttagatgatgtctctcttggatttctttgaaagtgttgactaatagagtttgataccgattcattggctatta |
29643417 |
T |
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| Q |
102 |
tggatcaaatgtactcttcttattaatttagtttcttttggttgttccccaaagttttgttgattggtaattctctaccaatctttgtattatctctgct |
201 |
Q |
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| T |
29643418 |
tggatcaaatgtactcttcttattaatttagtttcttttggttgttccccaaagttttgttgattggtaattctctaccaatctttgaattatttctgct |
29643517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 2 - 201
Target Start/End: Original strand, 29648542 - 29648736
Alignment:
| Q |
2 |
ttagaactcattttatataagatagttttagatgatgtctctcttggatttctttgaaagtgttgactaatagagtttgataccgattcattggctatta |
101 |
Q |
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||||||||||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
29648542 |
ttagaactcattttatataagatagttttagataatctctctcttggatttttttgaaagtgttgactaatagagtttaataccgactcattggctat-- |
29648639 |
T |
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| Q |
102 |
tggatcaaatgtactcttcttattaatttagtttcttttggttgttccccaaagttttgttgattggtaattctctaccaatctttgtattatctctgct |
201 |
Q |
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||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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| T |
29648640 |
-gga--aaatgtactcttcttattaatttagtgtcttttggttgttccccaaagttttgttgattggtaattctctaccaatctttgaattatttctgct |
29648736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 34 - 201
Target Start/End: Complemental strand, 29596719 - 29596554
Alignment:
| Q |
34 |
tgatgtctctcttggatttctttgaaagtgttgactaatagagtttgataccgattcattggctattatggat-caaatgtactcttcttattaatttag |
132 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||||| ||| || | |||||| ||||||| |||||||||| ||| |||||||||| |
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| T |
29596719 |
tgatgtctcttttggatttctttgaaagtgttgactaattgagtttaatattgacttattggc---tatggataaaaatgtactcctctcattaatttag |
29596623 |
T |
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| Q |
133 |
tttcttttggttgttccccaaagttttgttgattggtaattctctaccaatctttgtattatctctgct |
201 |
Q |
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| T |
29596622 |
tgacttttggttattccccaatgttttgttgattggtaattctctatcaatctttgaattatttctgct |
29596554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 19820162 - 19820213
Alignment:
| Q |
150 |
ccaaagttttgttgattggtaattctctaccaatctttgtattatctctgct |
201 |
Q |
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| T |
19820162 |
ccaaagttttgttgattggtaattccctatcaatctttgaattatttctgct |
19820213 |
T |
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