View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11575_low_68 (Length: 209)
Name: NF11575_low_68
Description: NF11575
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11575_low_68 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: scaffold2079 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 1041 - 852
Alignment:
| Q |
1 |
tccaagtaaaagaattaccatcatgaatggaaggaaactattgatgtgaagctgcaccaaagctaggtagtaaagaaaaatcgcaaaaaccaaagccatc |
100 |
Q |
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| T |
1041 |
tccaagtaaaagaattaccatcatgaatgggaggaaactattgatgtgaagctgcaccaaagctaggtagtaaagaaaaatggcaaaaaccaaagcc--- |
945 |
T |
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| Q |
101 |
atcagtagagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaact |
193 |
Q |
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| T |
944 |
atcagtagagattttcggttgcttgtattcattgctgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataattctccaact |
852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 193
Target Start/End: Complemental strand, 6242833 - 6242626
Alignment:
| Q |
1 |
tccaagtaaaagaattaccatcatgaatggaaggaaactattgatgtgaagctg---------------caccaaagctaggtagtaaagaaaaatcgca |
85 |
Q |
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| T |
6242833 |
tccaagtaaaagaattaccatcatgtatggaaggaaactattgatgtgaagctgtaacattgtcacaagcaccaaagctaggtagtaaagaaaaatagcg |
6242734 |
T |
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| Q |
86 |
aaaaccaaagccatcatcagtagagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataatt |
185 |
Q |
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| T |
6242733 |
aaaaccaaagccatcatcagtagagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaatagcttgaaaaattggccaaataatt |
6242634 |
T |
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| Q |
186 |
ctccaact |
193 |
Q |
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|||||||| |
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| T |
6242633 |
ctccaact |
6242626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 6325984 - 6326061
Alignment:
| Q |
108 |
gagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataatt |
185 |
Q |
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| T |
6325984 |
gagactttcccttacttgtgttcattttcgcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataatt |
6326061 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 108 - 185
Target Start/End: Original strand, 6333461 - 6333538
Alignment:
| Q |
108 |
gagattttccgttgcttgtattcattgctgcaaacccgacgattgcaaacaattgcttgaaaaattggccaaataatt |
185 |
Q |
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| T |
6333461 |
gagactttcccttacttgtgttcattttcgcaaacccgatgattgcaaacaatagctcgaaaaattggccaaataatt |
6333538 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 6219669 - 6219620
Alignment:
| Q |
1 |
tccaagtaaaagaattaccatcatgaatggaaggaaactattgatgtgaa |
50 |
Q |
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| T |
6219669 |
tccaagtaaaacaataaccatcatgaatggaaggaagctcttgatgtgaa |
6219620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 6346441 - 6346494
Alignment:
| Q |
1 |
tccaagtaaaagaattaccatcatgaatggaaggaaactattgatgtgaagctg |
54 |
Q |
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||||||||||| ||| |||||||||||||||||||| | |||||||||||||| |
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| T |
6346441 |
tccaagtaaaacaataaccatcatgaatggaaggaagttcttgatgtgaagctg |
6346494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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