View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11576_high_4 (Length: 254)
Name: NF11576_high_4
Description: NF11576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11576_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 7427926 - 7427690
Alignment:
| Q |
1 |
agagtttacactctaggtacagattcttggagaaaaatacaagactttccacatttatccttgtatcatccatcgggagtatttgtgagtggggctgtta |
100 |
Q |
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| T |
7427926 |
agagtttacactctaggtacagattcttggagaaaaatacaagactttccacatttatccttgtatcatccatcgggagtatttgtgagtggggctgtta |
7427827 |
T |
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| Q |
101 |
attggttggtttatgatggttttcgtagttttattattgtttctcttgatttagagaaggagtcatatcaatatatttcgcagcctgtttcggaaatgag |
200 |
Q |
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| T |
7427826 |
attggttggtttatgatggttttcgtagttttattattgtttctcttgatttagagaaggagtcatatcaatatatttcgcagcctgtttcggaaatgag |
7427727 |
T |
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| Q |
201 |
tttgtatactttgggggttttgaaggattggttgttc |
237 |
Q |
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| T |
7427726 |
tttgtatactttgggggttttgaaggattgcttgttc |
7427690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 12217760 - 12217992
Alignment:
| Q |
1 |
agagtttacactctaggtacagattcttggagaaaaatacaagactttccacatttatccttgtatcatccatcgggagtatttgtgagtggggctgtta |
100 |
Q |
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| T |
12217760 |
agagtttacactctaggtacagattcttggagaaaaatacaagacttcccaaatttatccttgtatcgtccatcaggagtatttgtgggtggtgccgtta |
12217859 |
T |
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| Q |
101 |
attggttggtttatgatggttttcgtagttttattattgtttctcttgatttagagaaggagtcatatcaatatatttcgcagcctgtttcggaaatgag |
200 |
Q |
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| T |
12217860 |
attggttggtttatgatggttttcgtagtt---ttattgtttctcttgatttagagaaggagtcatatcaatatatttcgccgcctgttttggagatgag |
12217956 |
T |
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| Q |
201 |
tttgtatactttgggggttttgaaggattggttgtt |
236 |
Q |
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| T |
12217957 |
tttgtttactttgggggttttgaaggattgcttgtt |
12217992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 72 - 171
Target Start/End: Original strand, 2456045 - 2456141
Alignment:
| Q |
72 |
atcgggagtatttgtgagtggggctgttaattggttggtttatgatggttttcgtagttttattattgtttctcttgatttagagaaggagtcatatcaa |
171 |
Q |
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| T |
2456045 |
atcgggagtatttgtgagtagcactgttaattggttgacatatgatcttttgcgta---tttttattgtttctcttgatttggagaaggagtcatatcaa |
2456141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 2474970 - 2475006
Alignment:
| Q |
135 |
tattgtttctcttgatttagagaaggagtcatatcaa |
171 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
2474970 |
tattctttctcttgatttagagaaggagtcatatcaa |
2475006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 2491946 - 2491982
Alignment:
| Q |
135 |
tattgtttctcttgatttagagaaggagtcatatcaa |
171 |
Q |
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|||| |||||||||||||||||||||||||||||||| |
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| T |
2491946 |
tattctttctcttgatttagagaaggagtcatatcaa |
2491982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 140 - 171
Target Start/End: Complemental strand, 754791 - 754760
Alignment:
| Q |
140 |
tttctcttgatttagagaaggagtcatatcaa |
171 |
Q |
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| T |
754791 |
tttctcttgatttagagaaggagtcatatcaa |
754760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 132 - 171
Target Start/End: Original strand, 1437860 - 1437899
Alignment:
| Q |
132 |
tattattgtttctcttgatttagagaaggagtcatatcaa |
171 |
Q |
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||||||||||||||||||||||||||||||| | |||||| |
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| T |
1437860 |
tattattgtttctcttgatttagagaaggagacgtatcaa |
1437899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 171
Target Start/End: Original strand, 24723212 - 24723248
Alignment:
| Q |
135 |
tattgtttctcttgatttagagaaggagtcatatcaa |
171 |
Q |
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|||||||||||||||||| ||||||||||| |||||| |
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| T |
24723212 |
tattgtttctcttgatttggagaaggagtcttatcaa |
24723248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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