View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11576_low_1 (Length: 427)
Name: NF11576_low_1
Description: NF11576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11576_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 236 - 339
Target Start/End: Complemental strand, 30758132 - 30758029
Alignment:
| Q |
236 |
caagctttgcgcattgcttctctgcatttctttcttacgaagatcttcatcttcttcctctgatttggaatgatggttcgtgcttcgaatcaacaacaac |
335 |
Q |
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| T |
30758132 |
caagctttgcgtattgcttctctgcatttatttcttacgaagatcttcatcttcttcctctgatttggaatgatggttcgtgcttcgaatcaacaacagc |
30758033 |
T |
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| Q |
336 |
aaca |
339 |
Q |
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|||| |
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| T |
30758032 |
aaca |
30758029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 236 - 339
Target Start/End: Complemental strand, 30765584 - 30765481
Alignment:
| Q |
236 |
caagctttgcgcattgcttctctgcatttctttcttacgaagatcttcatcttcttcctctgatttggaatgatggttcgtgcttcgaatcaacaacaac |
335 |
Q |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
30765584 |
caagctttgcgtattgcttctctgcatttatttcttacgaagatcttcatcttcttcctctgatttggaatgatggttcgtgcttcgaatcaacaacagc |
30765485 |
T |
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| Q |
336 |
aaca |
339 |
Q |
| |
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|||| |
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| T |
30765484 |
aaca |
30765481 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 30758387 - 30758211
Alignment:
| Q |
1 |
agtgatttagttagcttagaccacaagcaacttagcttacattagtagtagctttaatatactgatgctagtc--------------------atcaact |
80 |
Q |
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| T |
30758387 |
agtggtttagatagcttagaccacaagcaacttagcttaccttagtagtagctttaatatgctgatgctagtccatcatatgtattgtacagcatcaact |
30758288 |
T |
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| Q |
81 |
acctataaatagttgttgaactttctgattcatcaagcaattacatattatttctatcatttataatatggtatcag |
157 |
Q |
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| T |
30758287 |
acctataaatagttgttgtactctctgattcatcaagcaattacatattatttctatcatttataatatggtatcag |
30758211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 30765839 - 30765663
Alignment:
| Q |
1 |
agtgatttagttagcttagaccacaagcaacttagcttacattagtagtagctttaatatactgatgctagtc--------------------atcaact |
80 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||| |
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| T |
30765839 |
agtggtttagatagcttagaccacaagcaacttagcttaccttagtagtagctttaatatgctgatgctagtccatcatatgtattgtacagcatcaact |
30765740 |
T |
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| Q |
81 |
acctataaatagttgttgaactttctgattcatcaagcaattacatattatttctatcatttataatatggtatcag |
157 |
Q |
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|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30765739 |
acctataaatagttgttgtactctctgattcatcaagcaattacatattatttctatcatttataatatggtatcag |
30765663 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 338 - 409
Target Start/End: Complemental strand, 30757999 - 30757929
Alignment:
| Q |
338 |
catagtgaaggacctcaattcggtgactgtgtctcctaagttcaatggatccaattatcttgcatggagtag |
409 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30757999 |
catagtgaaggacct-aattcggtgattgtgtctcctaagttcaatggatccaattatcttgcatggagtag |
30757929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 338 - 409
Target Start/End: Complemental strand, 30765451 - 30765381
Alignment:
| Q |
338 |
catagtgaaggacctcaattcggtgactgtgtctcctaagttcaatggatccaattatcttgcatggagtag |
409 |
Q |
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||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30765451 |
catagtgaaggacct-aattcggtgattgtgtctcctaagttcaatggatccaattatcttgcatggagtag |
30765381 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 340 - 406
Target Start/End: Original strand, 25226644 - 25226709
Alignment:
| Q |
340 |
tagtgaaggacctcaattcggtgactgtgtctcctaagttcaatggatccaattatcttgcatggag |
406 |
Q |
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||||||||||||| || ||||||| ||||||||||| |||||| || ||||| |||||| ||||||| |
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| T |
25226644 |
tagtgaaggacct-aactcggtgattgtgtctcctatgttcaacggctccaactatcttacatggag |
25226709 |
T |
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