View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11576_low_3 (Length: 289)
Name: NF11576_low_3
Description: NF11576
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11576_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 86 - 244
Target Start/End: Original strand, 2203665 - 2203823
Alignment:
| Q |
86 |
aaataccgttgcttctgaaagttgacgcatttcttcaaatagggcagcttcttgtttgtggcgtccactggtatcaacaattataagatcacagttttgt |
185 |
Q |
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| T |
2203665 |
aaataccgttgcttctgaaacttgacgcatttcttcaaaaagagcagcttcttgtttgtgccgcccactagtatcaacaattataagatcacagttttct |
2203764 |
T |
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| Q |
186 |
tccttgaatctctccacaccttccacagcaattttgaaaggatctgactccatatagct |
244 |
Q |
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| T |
2203765 |
ttcttgaatctttccacaccttccacagcaattttcacaggatctgactccatatagct |
2203823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 4e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 88 - 244
Target Start/End: Complemental strand, 44826444 - 44826288
Alignment:
| Q |
88 |
ataccgttgcttctgaaagttgacgcatttcttcaaatagggcagcttcttgtttgtggcgtccactggtatcaacaattataagatcacagttttgttc |
187 |
Q |
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| T |
44826444 |
ataccgtagcttccgaaagttggcgcatttcttcaaaaagggatgcttcttgtttgtgccgcccactggtatcaacaattataagatcatggtcttcttc |
44826345 |
T |
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| Q |
188 |
cttgaatctctccacaccttccacagcaattttgaaaggatctgactccatatagct |
244 |
Q |
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| T |
44826344 |
cttgaatctttccacaccttccacagcaattttgacaggatctgactccatatagct |
44826288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 220
Target Start/End: Original strand, 33167657 - 33167778
Alignment:
| Q |
102 |
gaaagttgacgcatttcttcaaatagggcagcttc---ttgtttgtggcgtccactggtatcaacaattataagatcacagttttgttccttgaatctct |
198 |
Q |
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| T |
33167657 |
gaaacttggcgcatttcttcaaaaagagcatcttcctcttgtttgtgacccccactggtatcaacacttataagatcatagttttcttccttgaacctct |
33167756 |
T |
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| Q |
199 |
ccacaccttccacagcaatttt |
220 |
Q |
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|||| |||||||| ||||||| |
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| T |
33167757 |
ccacgccttccaccacaatttt |
33167778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 82 - 222
Target Start/End: Original strand, 33115938 - 33116080
Alignment:
| Q |
82 |
taataaataccgttgcttctgaaagttgacgcatttcttcaaatagggcagcttctt---gtttgtggcgtccactggtatcaacaattataagatcaca |
178 |
Q |
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|||||||||||||||||| ||||| ||| | |||||||||| || ||| |||||| ||||||| | ||||| ||||||||||||||||||||| |
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| T |
33115938 |
taataaataccgttgcttttgaaacttggtgaatttcttcaataagagcatcttcttcttgtttgtgccccccactcacatcaacaattataagatcaca |
33116037 |
T |
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| Q |
179 |
gttttgttccttgaatctctccacaccttccacagcaattttga |
222 |
Q |
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| T |
33116038 |
g-tttcctccttgcatctgtccacacctttcacggcaattttga |
33116080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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